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    SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [ Canis lupus familiaris (dog) ]

    Gene ID: 475451, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMARCA5provided by VGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5provided by VGNC
    Primary source
    VGNC:VGNC:46531
    See related
    Ensembl:ENSCAFG00845011175
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCA5 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (43391125..43431354)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (43114109..43154330)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (43023307..43063521)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (42668391..42708501)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (42752138..42792336)

    Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111090071 Neighboring gene uncharacterized LOC119874588 Neighboring gene U6 spliceosomal RNA Neighboring gene FRAS1 related extracellular matrix 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5; LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051819.1 Reference ROS_Cfam_1.0

      Range
      43391125..43431354
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038688484.1 → XP_038544412.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

      UniProtKB/TrEMBL
      A0A8C0MPS3, A0A8C0THR5, A0A8I3NHW1
      Related
      ENSCAFP00845015520.1, ENSCAFT00845019825.1
      Conserved Domains (1) summary
      PLN03142
      Location:69 → 1012
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049275.1 Alternate UMICH_Zoey_3.1

      Range
      42668391..42708501
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038496490.1 → XP_038352418.1  LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

      Range
      42752138..42792336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038622810.1 → XP_038478738.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

      Conserved Domains (1) summary
      PLN03142
      Location:69 → 1012
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

      Range
      43023307..43063521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038558886.1 → XP_038414814.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

      UniProtKB/TrEMBL
      A0A8C0THR5

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      43114109..43154330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_532676.8 → XP_532676.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

      UniProtKB/TrEMBL
      A0A8C0MPS3, A0A8C0THR5, A0A8I3NHW1
      Conserved Domains (1) summary
      PLN03142
      Location:69 → 1012
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    Nucleotide Protein
    Heading Accession and Version

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