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    LSM10 LSM10, U7 small nuclear RNA associated [ Canis lupus familiaris (dog) ]

    Gene ID: 475335, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LSM10provided by VGNC
    Official Full Name
    LSM10, U7 small nuclear RNA associatedprovided by VGNC
    Primary source
    VGNC:VGNC:42839
    See related
    Ensembl:ENSCAFG00845030776
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See LSM10 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (6021797..6024448)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (6129013..6131662)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (5958056..5960705)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (5875203..5877852)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (5942933..5945581)

    Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S15 Neighboring gene organic solute carrier partner 1 Neighboring gene serine/threonine kinase 40 Neighboring gene uncharacterized LOC119869319 Neighboring gene eva-1 homolog B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U7 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone pre-mRNA DCP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic U snRNP body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U7 snRNA-associated Sm-like protein LSm10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051819.1 Reference ROS_Cfam_1.0

      Range
      6021797..6024448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038687219.1 → XP_038543147.1  U7 snRNA-associated Sm-like protein LSm10

      UniProtKB/TrEMBL
      A0A8C0K6W5, A0A8C0NXH6, A0A8I3Q5G2
      Related
      ENSCAFP00845043010.1, ENSCAFT00845054689.1
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049275.1 Alternate UMICH_Zoey_3.1

      Range
      5875203..5877852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038496791.1 → XP_038352719.1  U7 snRNA-associated Sm-like protein LSm10

      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

      Range
      5942933..5945581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038621464.1 → XP_038477392.1  U7 snRNA-associated Sm-like protein LSm10

      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

      Range
      5958056..5960705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038557556.1 → XP_038413484.1  U7 snRNA-associated Sm-like protein LSm10

      UniProtKB/TrEMBL
      A0A8C0K6W5, A0A8C0NXH6, A0A8I3Q5G2
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      6129013..6131662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_532561.7 → XP_532561.1  U7 snRNA-associated Sm-like protein LSm10

      See identical proteins and their annotated locations for XP_532561.1

      UniProtKB/TrEMBL
      A0A8C0K6W5, A0A8C0NXH6, A0A8I3Q5G2
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10
    Nucleotide Protein
    Heading Accession and Version

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