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    SNX10 sorting nexin 10 [ Canis lupus familiaris (dog) ]

    Gene ID: 475261, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNX10provided by VGNC
    Official Full Name
    sorting nexin 10provided by VGNC
    Primary source
    VGNC:VGNC:46620
    See related
    Ensembl:ENSCAFG00845011117
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SNX10 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (39506523..39581109)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (39058554..39132699)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (39659123..39733270)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (39621497..39695665)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (39308572..39382686)

    Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene chromobox 3 Neighboring gene uncharacterized LOC102154772 Neighboring gene uncharacterized LOC119866299 Neighboring gene uncharacterized LOC111098806 Neighboring gene uncharacterized LOC119866302 Neighboring gene uncharacterized LOC111098688

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051818.1 Reference ROS_Cfam_1.0

      Range
      39506523..39581109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038686773.1 → XP_038542701.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    2. XM_038686777.1 → XP_038542705.1  sorting nexin-10 isoform X2

      UniProtKB/TrEMBL
      A0A8C0MHW7, A0A8I3NHN9
      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    3. XM_038686774.1 → XP_038542702.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    4. XM_038686776.1 → XP_038542704.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Related
      ENSCAFP00845015469.1, ENSCAFT00845019763.1
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    5. XM_038686775.1 → XP_038542703.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049274.1 Alternate UMICH_Zoey_3.1

      Range
      39621497..39695665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038494882.1 → XP_038350810.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    2. XM_038494886.1 → XP_038350814.1  sorting nexin-10 isoform X2

      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    3. XM_038494883.1 → XP_038350811.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    4. XM_038494885.1 → XP_038350813.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    5. XM_038494884.1 → XP_038350812.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

      Range
      39308572..39382686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038621095.1 → XP_038477023.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    2. XM_038621100.1 → XP_038477028.1  sorting nexin-10 isoform X2

      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    3. XM_038621097.1 → XP_038477025.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    4. XM_038621099.1 → XP_038477027.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    5. XM_038621098.1 → XP_038477026.1  sorting nexin-10 isoform X1

      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

      Range
      39659123..39733270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038557157.1 → XP_038413085.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    2. XM_038557161.1 → XP_038413089.1  sorting nexin-10 isoform X2

      UniProtKB/TrEMBL
      A0A8C0MHW7, A0A8I3NHN9
      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    3. XM_038557158.1 → XP_038413086.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    4. XM_038557160.1 → XP_038413088.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    5. XM_038557159.1 → XP_038413087.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      39058554..39132699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005628650.4 → XP_005628707.1  sorting nexin-10 isoform X1

      See identical proteins and their annotated locations for XP_005628707.1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    2. XM_038437842.1 → XP_038293770.1  sorting nexin-10 isoform X2

      UniProtKB/TrEMBL
      A0A8C0MHW7, A0A8I3NHN9
      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    3. XM_005628651.4 → XP_005628708.1  sorting nexin-10 isoform X1

      See identical proteins and their annotated locations for XP_005628708.1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    4. XM_005628652.4 → XP_005628709.1  sorting nexin-10 isoform X1

      See identical proteins and their annotated locations for XP_005628709.1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    5. XM_038437833.1 → XP_038293761.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S1V6, A0A8C0S220, A0A8I3NGQ8
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10
    Nucleotide Protein
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