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    CPSF6 cleavage and polyadenylation specific factor 6 [ Canis lupus familiaris (dog) ]

    Gene ID: 474441, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CPSF6provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 6provided by VGNC
    Primary source
    VGNC:VGNC:39577
    See related
    Ensembl:ENSCAFG00845017068
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CPSF6 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (11384373..11420547)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (11192974..11229102)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (11620546..11656791)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (11251450..11287708)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (11498596..11534738)

    Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene cell division cycle-associated protein 3-like Neighboring gene uncharacterized LOC102153150 Neighboring gene mitochondrial import inner membrane translocase subunit TIM14-like Neighboring gene uncharacterized LOC119873589 Neighboring gene MICOS complex subunit MIC26-like Neighboring gene lysozyme

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA alternative polyadenylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      11384373..11420547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038679307.1 → XP_038535235.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      Conserved Domains (1) summary
      cd12643
      Location:80 → 156
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    2. XM_038679305.1 → XP_038535233.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      UniProtKB/TrEMBL
      A0A8I3NRB7
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    3. XM_038679306.1 → XP_038535234.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R2R8, A0A8C0RF04, A0A8I3NRB7, A0A8I3NYP4
      Related
      ENSCAFP00845023723.1, ENSCAFT00845030252.1
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    4. XM_038679308.1 → XP_038535236.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      UniProtKB/TrEMBL
      A0A8I3NRB7
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    5. XM_038679309.1 → XP_038535237.1  cleavage and polyadenylation specificity factor subunit 6 isoform X5

      UniProtKB/TrEMBL
      A0A8C0QBL4, A0A8C0R2F7, A0A8I3NRB7
      Related
      ENSCAFP00845023696.1, ENSCAFT00845030219.1
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049270.1 Alternate UMICH_Zoey_3.1

      Range
      11251450..11287708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038488084.1 → XP_038344012.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      Conserved Domains (1) summary
      cd12643
      Location:80 → 156
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    2. XM_038488082.1 → XP_038344010.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    3. XM_038488083.1 → XP_038344011.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    4. XM_038488085.1 → XP_038344013.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    5. XM_038488086.1 → XP_038344014.1  cleavage and polyadenylation specificity factor subunit 6 isoform X5

      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      11498596..11534738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038613956.1 → XP_038469884.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      Conserved Domains (1) summary
      cd12643
      Location:80 → 156
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    2. XM_038613954.1 → XP_038469882.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    3. XM_038613955.1 → XP_038469883.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    4. XM_038613958.1 → XP_038469886.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    5. XM_038613959.1 → XP_038469887.1  cleavage and polyadenylation specificity factor subunit 6 isoform X5

      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      11620546..11656791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038549974.1 → XP_038405902.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      Conserved Domains (1) summary
      cd12643
      Location:80 → 156
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    2. XM_038549972.1 → XP_038405900.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      UniProtKB/TrEMBL
      A0A8I3NRB7
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    3. XM_038549973.1 → XP_038405901.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R2R8, A0A8C0RF04, A0A8I3NRB7, A0A8I3NYP4
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    4. XM_038549975.1 → XP_038405903.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      UniProtKB/TrEMBL
      A0A8I3NRB7
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    5. XM_038549976.1 → XP_038405904.1  cleavage and polyadenylation specificity factor subunit 6 isoform X5

      UniProtKB/TrEMBL
      A0A8C0QBL4, A0A8C0R2F7, A0A8I3NRB7
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      11192974..11229102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038634445.1 → XP_038490373.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      Conserved Domains (1) summary
      cd12643
      Location:80 → 156
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    2. XM_038634427.1 → XP_038490355.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      UniProtKB/TrEMBL
      A0A8I3NRB7
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    3. XM_038634436.1 → XP_038490364.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R2R8, A0A8C0RF04, A0A8I3NRB7, A0A8I3NYP4
      Conserved Domains (2) summary
      COG0724
      Location:9 → 152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    4. XM_038634448.1 → XP_038490376.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      UniProtKB/TrEMBL
      A0A8I3NRB7
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    5. XM_038634450.1 → XP_038490378.1  cleavage and polyadenylation specificity factor subunit 6 isoform X5

      UniProtKB/TrEMBL
      A0A8C0QBL4, A0A8C0R2F7, A0A8I3NRB7
      Conserved Domains (1) summary
      cd12643
      Location:82 → 158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    Nucleotide Protein
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