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    vezf1 vascular endothelial zinc finger 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448632, updated on 17-Aug-2024

    Summary

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    Official Symbol
    vezf1provided by Xenbase
    Official Full Name
    vascular endothelial zinc finger 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-481523
    See related
    Ensembl:ENSXETG00000008951
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    db1; znf161; vezf1-a; vezf1-b
    Orthologs
    human mouse all
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    Genomic context

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    See vezf1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (76136370..76162601)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (50321080..50348823)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene transcriptional adaptor 2A Neighboring gene serine/arginine-rich splicing factor 1 Neighboring gene CUE domain containing 1 Neighboring gene guanylate cyclase activator 1C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC82370, MGC89490

    General protein information

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    Preferred Names
    vascular endothelial zinc finger 1
    Names
    zinc finger protein 161
    zinc finger protein 161. Transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006864.1 → NP_001006865.1  vascular endothelial zinc finger 1

      See identical proteins and their annotated locations for NP_001006865.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076974
      UniProtKB/TrEMBL
      A0A6I8PNL0, Q6DEW9
      Related
      ENSXETP00000091952.1, ENSXETT00000087878.2
      Conserved Domains (3) summary
      COG5189
      Location:206 → 263
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam03154
      Location:372 → 510
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      76136370..76162601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956767.3 → XP_012812221.1  vascular endothelial zinc finger 1 isoform X3

      UniProtKB/TrEMBL
      A0A6I8RFS7, A0A8J0SE79
      Conserved Domains (2) summary
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:196 → 221
      zf-H2C2_2; Zinc-finger double domain

    2. XM_012956766.3 → XP_012812220.1  vascular endothelial zinc finger 1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8RFS7, F6USG1
      Related
      ENSXETP00000019604.3, ENSXETT00000019604.4
      Conserved Domains (4) summary
      COG5189
      Location:206 → 263
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:182 → 204
      zf-C2H2; Zinc finger, C2H2 type
      pfam03154
      Location:354 → 492
      Atrophin-1; Atrophin-1 family

    3. XM_012956765.3 → XP_012812219.1  vascular endothelial zinc finger 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PNL0, A0A8J0S7E6
      Conserved Domains (3) summary
      COG5189
      Location:206 → 263
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam03154
      Location:367 → 505
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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