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    akr1c8 aldo-keto reductase family 1, member C8 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448368, updated on 17-Aug-2024

    Summary

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    Official Symbol
    akr1c8provided by Xenbase
    Official Full Name
    aldo-keto reductase family 1, member C8provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5757727
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    akr1c8p; akr1cl1
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    Genomic context

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    See akr1c8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (7579038..7623404)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (1492750..1500184, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 1, member B1 (aldose reductase) Neighboring gene aldo-keto reductase family 1 member C15-like Neighboring gene aldo-keto reductase family 1 member C15-like Neighboring gene novel aldo-keto reductase family 1 c (akr1c) protein Neighboring gene aldo-keto reductase family 1, member C3 Neighboring gene aldo-keto reductase family 1, member C2 Neighboring gene provisional ortholog of carbonyl reductase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC89235

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    aldo-keto reductase family 1, member C8; aldo-keto reductase family 1, member C8, pseudogene
    Names
    aldo-keto reductase family 1, member C-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004955.1 → NP_001004955.1  aldo-keto reductase family 1, member C8

      See identical proteins and their annotated locations for NP_001004955.1

      Status: PROVISIONAL

      Source sequence(s)
      BC075451
      UniProtKB/TrEMBL
      F7EH85, Q6DIT4
      Conserved Domains (1) summary
      COG0656
      Location:9 → 312
      ARA1; Aldo/keto reductase, related to diketogulonate reductase [Secondary metabolites biosynthesis, transport and catabolism]

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      7579038..7623404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031897829.1 → XP_031753689.1  aldo-keto reductase family 1, member C8, pseudogene isoform X1

      UniProtKB/TrEMBL
      F7EH85
      Conserved Domains (1) summary
      cd19108
      Location:8 → 306
      AKR_AKR1C1-35; AKR1C family of aldo-keto reductase (AKR)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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