ciapin1 cytokine induced apoptosis inhibitor 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ciapin1provided by ZNC
Official Full Name: cytokine induced apoptosis inhibitor 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040808-57
See related: Ensembl:ENSDARG00000045733 AllianceGenome:ZFIN:ZDB-GENE-040808-57
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc46b12; zgc:92009; wu:fc46b12
Summary: Predicted to enable 2 iron, 2 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrial intermembrane space and nucleus. Predicted to be active in cytoplasm. Orthologous to human CIAPIN1 (cytokine induced apoptosis inhibitor 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 25

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (14397636..14406726)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (14302247..14310326)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 2 iron, 2 sulfur cluster binding	IEA Inferred from Electronic Annotation more info
enables 2 iron, 2 sulfur cluster binding	ISS Inferred from Sequence or Structural Similarity more info
enables 4 iron, 4 sulfur cluster binding	IEA Inferred from Electronic Annotation more info
enables electron transfer activity	IEA Inferred from Electronic Annotation more info
enables iron-sulfur cluster binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within apoptotic process	IEA Inferred from Electronic Annotation more info
involved_in hemopoiesis	IEA Inferred from Electronic Annotation more info
involved_in iron-sulfur cluster assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within iron-sulfur cluster assembly	IEA Inferred from Electronic Annotation more info
involved_in iron-sulfur cluster assembly	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of apoptotic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in mitochondrial intermembrane space	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: anamorsin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003738.1 → NP_001003738.1 anamorsin

See identical proteins and their annotated locations for NP_001003738.1

Status: PROVISIONAL

Source sequence(s)

BC078404

UniProtKB/Swiss-Prot

A2AV35, Q6AZB3

UniProtKB/TrEMBL

B2GNT9, Z4YI85

Related

ENSDARP00000105419.3, ENSDART00000130548.3

Conserved Domains (2) summary

pfam05093
Location:244 → 303

CIAPIN1; Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

cl17173
Location:58 → 95

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007136.7 Reference GRCz11 Primary Assembly

Range

14397636..14406726

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_068217363.1 → XP_068073464.1 anamorsin isoform X2
XM_068217364.1 → XP_068073465.1 anamorsin isoform X2
XM_005174320.5 → XP_005174377.2 anamorsin isoform X1

UniProtKB/TrEMBL

A0A8M2BLK5

Conserved Domains (2) summary

pfam05093
Location:273 → 332

CIAPIN1; Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

cl17173
Location:87 → 124

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
XM_005174321.5 → XP_005174378.1 anamorsin isoform X2

See identical proteins and their annotated locations for XP_005174378.1

UniProtKB/Swiss-Prot

A2AV35, Q6AZB3

UniProtKB/TrEMBL

B2GNT9, Z4YI85

Conserved Domains (2) summary

pfam05093
Location:244 → 303

CIAPIN1; Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

cl17173
Location:58 → 95

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...