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    SLBP stem-loop binding protein [ Bos taurus (domestic cattle) ]

    Gene ID: 444868, updated on 10-Oct-2024

    Summary

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    Official Symbol
    SLBPprovided by VGNC
    Official Full Name
    stem-loop binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:34658
    See related
    Ensembl:ENSBTAG00000001328
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SLBP in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (116841884..116857412)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene transforming acidic coiled-coil containing protein 3 Neighboring gene transmembrane protein 129, E3 ubiquitin ligase Neighboring gene family with sequence similarity 53 member A Neighboring gene nascent polypeptide-associated complex subunit alpha, muscle-specific form-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC134385

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ferric iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone pre-mRNA stem-loop binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone pre-mRNA 3'end processing complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone RNA hairpin-binding protein
    Names
    RNA binding protein
    histone stem loop binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045880.2 → NP_001039345.1  histone RNA hairpin-binding protein

      See identical proteins and their annotated locations for NP_001039345.1

      Status: PROVISIONAL

      Source sequence(s)
      BC110146
      UniProtKB/TrEMBL
      F1MQ42, Q2YDN0
      Conserved Domains (2) summary
      pfam15247
      Location:130 → 197
      SLBP_RNA_bind; Histone RNA hairpin-binding protein RNA-binding domain
      pfam15297
      Location:32 → 102
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      116841884..116857412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059887398.1 → XP_059743381.1  histone RNA hairpin-binding protein isoform X2

      Related
      ENSBTAP00000001753.4, ENSBTAT00000001753.5

    2. XM_015471756.3 → XP_015327242.1  histone RNA hairpin-binding protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9RX32
      Related
      ENSBTAP00000075693.1, ENSBTAT00000112768.1
      Conserved Domains (4) summary
      cd00904
      Location:276 → 435
      Ferritin; Ferritin iron storage proteins
      pfam00210
      Location:280 → 421
      Ferritin; Ferritin-like domain
      pfam15247
      Location:130 → 197
      SLBP_RNA_bind; Histone RNA hairpin-binding protein RNA-binding domain
      pfam15297
      Location:32 → 102
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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