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    atg3.S autophagy related 3 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 443885, updated on 18-Sep-2024

    Summary

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    Official Symbol
    atg3.S
    Official Full Name
    autophagy related 3 S homeolog
    Primary source
    Xenbase:XB-GENE-953272
    Locus tag
    XELAEV_18014721mg
    See related
    EnsemblRapid:ENSXLAG00005025215
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    atg3; apg3l; atg3l
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    Genomic context

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    See atg3.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (47430984..47450942)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (44593034..44612978)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 80 S homeolog Neighboring gene solute carrier family 35 member A5 S homeolog Neighboring gene uncharacterized LOC121400519 Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene transfer RNA leucine (anticodon UAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables Atg12 transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables Atg8-family conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables Atg8-family conjugating enzyme activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables Atg8-family ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables Atg8-family ligase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within autophagosome assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within autophagy ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mitochondrial fragmentation involved in apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-like-conjugating enzyme ATG3
    Names
    ATG3 autophagy related 3 homolog
    autophagy-related protein 3
    NP_001085459.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091990.2 → NP_001085459.1  ubiquitin-like-conjugating enzyme ATG3

      See identical proteins and their annotated locations for NP_001085459.1

      Status: PROVISIONAL

      Source sequence(s)
      BC072798
      UniProtKB/Swiss-Prot
      Q6GQE7
      UniProtKB/TrEMBL
      A0A974DJA4
      Related
      ENSXLAP00005074866.1, ENSXLAT00005076446.1
      Conserved Domains (3) summary
      pfam03986
      Location:8 → 132
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:203 → 264
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain
      pfam10381
      Location:285 → 308
      Autophagy_C; Autophagocytosis associated protein C-terminal

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      47430984..47450942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GQE7.1 GenPept UniProtKB/Swiss-Prot:Q6GQE7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials