atg5.L autophagy related 5 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: atg5.L
Official Full Name: autophagy related 5 L homeolog
Primary source: Xenbase:XB-GENE-1012771
Locus tag: XELAEV_18027227mg
See related: EnsemblRapid:ENSXLAG00005028526
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: atg5
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 5L

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5L	NC_054379.1 (82935963..83030969)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5L	NC_030732.1 (80716897..80812199)

Chromosome 5L - NC_054379.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables Atg8-family ligase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within C-terminal protein lipidation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within autophagosome assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within autophagy	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within autophagy of mitochondrion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cellular response to nitrogen starvation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within macroautophagy	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within nucleophagy	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Atg12-Atg5-Atg16 complex	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in phagophore assembly site membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: autophagy related 5 L homeolog

Names: ATG5 autophagy related 5 homolog; autophagy protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.