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    LOC4331833 protein TIFY 11c-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331833, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331833
    Gene description
    protein TIFY 11c-like
    Locus tag
    OSNPB_030180900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    JAZ11; OsJAZ2; OsJAZ11; TIFY11C; OsJ_09657; OsTIFY11c
    Expression
    Restricted expression toward roots before flowering (RPKM 644.2) See more
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    Genomic context

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    See LOC4331833 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4247234..4248574)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4236679..4238074)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein DEEPER ROOTING 1-like Neighboring gene UDP-glycosyltransferase TURAN Neighboring gene protein TIFY 11a-like Neighboring gene protein TIFY 11b-like Neighboring gene protein WHAT'S THIS FACTOR 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation. Toda Y, et al. Plant Cell, 2013 May. PMID 23715469, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that RICE SALT SENSITIVE3 (RSS3) interacts with JAZ proteins JAZ9 (Os03g0180800) and JAZ11 (Os03g0180900).
      Title: RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIFY 11c
    Names
    Jasmonate ZIM domain-containing protein 11
    LOC_Os03g08320
    OSJNBa0050H14.23
    OSJNBb0076N15.9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417247.1 → NP_001404176.1  protein TIFY 11c

      Status: VALIDATED

      Source sequence(s)
      CI085323, CI162869, CI653820, CI663173
      UniProtKB/Swiss-Prot
      A0A0P0VTW6, A2XD79, Q8GRS2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4247234..4248574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GRS2.1 GenPept UniProtKB/Swiss-Prot:Q8GRS2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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