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    APIP APAF1 interacting protein [ Gallus gallus (chicken) ]

    Gene ID: 428860, updated on 17-Aug-2024

    Summary

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    Symbol
    APIPprovided by CGNC
    Full Name
    APAF1 interacting proteinprovided by CGNC
    Primary source
    CGNC:5921
    See related
    Ensembl:ENSGALG00010024945
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See APIP in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (18386080..18399163, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (18346438..18359480, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene E74 like ETS transcription factor 5 Neighboring gene ETS homologous factor Neighboring gene pyruvate dehydrogenase complex component X Neighboring gene CD44 molecule Neighboring gene uncharacterized LOC107053464 Neighboring gene solute carrier family 1 member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylthioribulose 1-phosphate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-methionine salvage from methylthioadenosine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methylthioribulose-1-phosphate dehydratase
    Names
    probable methylthioribulose-1-phosphate dehydratase
    NP_001026718.1
    XP_025006596.2
    XP_046774784.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031547.2 → NP_001026718.1  methylthioribulose-1-phosphate dehydratase

      See identical proteins and their annotated locations for NP_001026718.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000214
      UniProtKB/Swiss-Prot
      Q5ZLP2
      Related
      ENSGALP00010037686.1, ENSGALT00010060929.1
      Conserved Domains (1) summary
      TIGR03328
      Location:28 → 226
      salvage_mtnB; methylthioribulose-1-phosphate dehydratase

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      18386080..18399163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025150828.3 → XP_025006596.2  methylthioribulose-1-phosphate dehydratase isoform X1

      UniProtKB/Swiss-Prot
      Q5ZLP2
      Conserved Domains (1) summary
      TIGR03328
      Location:28 → 226
      salvage_mtnB; methylthioribulose-1-phosphate dehydratase

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      18346438..18359480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918828.1 → XP_046774784.1  methylthioribulose-1-phosphate dehydratase isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZLP2.1 GenPept UniProtKB/Swiss-Prot:Q5ZLP2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials