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    DPCD deleted in primary ciliary dyskinesia homolog (mouse) [ Gallus gallus (chicken) ]

    Gene ID: 423852, updated on 17-Aug-2024

    Summary

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    Symbol
    DPCDprovided by CGNC
    Full Name
    deleted in primary ciliary dyskinesia homolog (mouse)provided by CGNC
    Primary source
    CGNC:52065
    See related
    Ensembl:ENSGALG00010019139
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See DPCD in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (23590394..23597865, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (23481642..23489114, complement)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111210 Neighboring gene fibroblast growth factor 8 Neighboring gene DNA polymerase lambda Neighboring gene microRNA 1674 Neighboring gene solute carrier family 2, facilitated glucose transporter member 9-like Neighboring gene beta-transducin repeat containing E3 ubiquitin protein ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein DPCD
    Names
    deleted in a mouse model of primary ciliary dyskinesia

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277365.1 → NP_001264294.1  protein DPCD isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BU353811, BU399154, BX932782
      UniProtKB/TrEMBL
      A0A8V0Z9I2
      Conserved Domains (1) summary
      pfam14913
      Location:6 → 200
      DPCD; DPCD protein family

    2. NM_001277366.2 → NP_001264295.1  protein DPCD isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      JAENSK010000232
      UniProtKB/TrEMBL
      A0A8V0Z9I2
      Related
      ENSGALP00010027597.1, ENSGALT00010046334.1
      Conserved Domains (1) summary
      pfam14913
      Location:6 → 194
      DPCD; DPCD protein family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      23590394..23597865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      23481642..23489114 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials