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    RB1CC1 RB1 inducible coiled-coil 1 [ Gallus gallus (chicken) ]

    Gene ID: 421116, updated on 17-Aug-2024

    Summary

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    Symbol
    RB1CC1provided by CGNC
    Full Name
    RB1 inducible coiled-coil 1provided by CGNC
    Primary source
    CGNC:11357
    See related
    Ensembl:ENSGALG00010004085
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RB1CC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (109618633..109692596, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (109675952..109749639, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene ST18, C2H2C-type zinc finger Neighboring gene family with sequence similarity 150 member A Neighboring gene translation initiation factor IF-2-like Neighboring gene neuropeptides B and W receptor 1 Neighboring gene opioid receptor kappa 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. miR-130b-3p/301b-3p negatively regulated Rb1cc1 expression on myogenic differentiation of chicken primary myoblasts. Xue J, et al. Biotechnol Lett, 2017 Nov. PMID 28721582
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables molecular adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piecemeal microautophagy of the nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reticulophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg1/ULK1 kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RB1-inducible coiled-coil protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      109618633..109692596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015282657.4 → XP_015138143.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      E1C330
      Conserved Domains (6) summary
      COG1340
      Location:934 → 1225
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam05308
      Location:571 → 697
      Mito_fiss_reg; Mitochondrial fission regulator
      pfam10377
      Location:1444 → 1593
      ATG11; Autophagy-related protein 11
      cl00155
      Location:3 → 77
      UBQ; Ubiquitin-like proteins
      cl02488
      Location:907 → 1064
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl12013
      Location:1016 → 1133
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    2. XM_015282655.4 → XP_015138141.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      E1C330
      Related
      ENSGALP00010005596.1, ENSGALT00010009493.1
      Conserved Domains (6) summary
      COG1340
      Location:934 → 1225
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam05308
      Location:571 → 697
      Mito_fiss_reg; Mitochondrial fission regulator
      pfam10377
      Location:1444 → 1593
      ATG11; Autophagy-related protein 11
      cl00155
      Location:3 → 77
      UBQ; Ubiquitin-like proteins
      cl02488
      Location:907 → 1064
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl12013
      Location:1016 → 1133
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    3. XM_015282656.4 → XP_015138142.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      E1C330
      Conserved Domains (6) summary
      COG1340
      Location:934 → 1225
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam05308
      Location:571 → 697
      Mito_fiss_reg; Mitochondrial fission regulator
      pfam10377
      Location:1444 → 1593
      ATG11; Autophagy-related protein 11
      cl00155
      Location:3 → 77
      UBQ; Ubiquitin-like proteins
      cl02488
      Location:907 → 1064
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl12013
      Location:1016 → 1133
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    4. XM_015282658.4 → XP_015138144.1  RB1-inducible coiled-coil protein 1 isoform X2

      Conserved Domains (6) summary
      COG1340
      Location:934 → 1225
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam05308
      Location:571 → 697
      Mito_fiss_reg; Mitochondrial fission regulator
      pfam10377
      Location:1444 → 1590
      ATG11; Autophagy-related protein 11
      cl00155
      Location:3 → 77
      UBQ; Ubiquitin-like proteins
      cl02488
      Location:907 → 1064
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl12013
      Location:1016 → 1133
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    5. XM_015282654.4 → XP_015138140.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      E1C330
      Conserved Domains (6) summary
      COG1340
      Location:934 → 1225
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam05308
      Location:571 → 697
      Mito_fiss_reg; Mitochondrial fission regulator
      pfam10377
      Location:1444 → 1593
      ATG11; Autophagy-related protein 11
      cl00155
      Location:3 → 77
      UBQ; Ubiquitin-like proteins
      cl02488
      Location:907 → 1064
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl12013
      Location:1016 → 1133
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    6. XM_046932595.1 → XP_046788551.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      E1C330

    7. XM_046932584.1 → XP_046788540.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      E1C330

    8. XM_015282659.4 → XP_015138145.1  RB1-inducible coiled-coil protein 1 isoform X3

      Conserved Domains (5) summary
      COG0419
      Location:736 → 1254
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      pfam05308
      Location:447 → 573
      Mito_fiss_reg; Mitochondrial fission regulator
      pfam10377
      Location:1320 → 1469
      ATG11; Autophagy-related protein 11
      cl02488
      Location:783 → 940
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl12013
      Location:892 → 1009
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      109675952..109749639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040664714.2 → XP_040520648.1  RB1-inducible coiled-coil protein 1 isoform X1

      Conserved Domains (2) summary
      COG0419
      Location:860 → 1382
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd17060
      Location:2 → 76
      Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

    2. XM_040664713.2 → XP_040520647.1  RB1-inducible coiled-coil protein 1 isoform X1

      Conserved Domains (2) summary
      COG0419
      Location:860 → 1382
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd17060
      Location:2 → 76
      Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

    3. XM_040664715.2 → XP_040520649.1  RB1-inducible coiled-coil protein 1 isoform X1

      Conserved Domains (2) summary
      COG0419
      Location:860 → 1382
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd17060
      Location:2 → 76
      Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

    4. XM_040664716.2 → XP_040520650.1  RB1-inducible coiled-coil protein 1 isoform X2

      Conserved Domains (2) summary
      COG0419
      Location:860 → 1382
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd17060
      Location:2 → 76
      Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

    5. XM_040664712.2 → XP_040520646.1  RB1-inducible coiled-coil protein 1 isoform X1

      Conserved Domains (2) summary
      COG0419
      Location:860 → 1382
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd17060
      Location:2 → 76
      Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

    6. XM_046912070.1 → XP_046768026.1  RB1-inducible coiled-coil protein 1 isoform X1

    7. XM_046912069.1 → XP_046768025.1  RB1-inducible coiled-coil protein 1 isoform X1

    8. XM_040664717.2 → XP_040520651.1  RB1-inducible coiled-coil protein 1 isoform X3

      Conserved Domains (1) summary
      COG0419
      Location:736 → 1258
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001031020.1: Suppressed sequence

      Description
      NM_001031020.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein Strain
    Heading Accession and Version

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