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    APOA5 apolipoprotein A5 [ Gallus gallus (chicken) ]

    Gene ID: 419802, updated on 17-Aug-2024

    Summary

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    Symbol
    APOA5provided by CGNC
    Full Name
    apolipoprotein A5provided by CGNC
    Primary source
    CGNC:10694
    See related
    Ensembl:ENSGALG00010024749
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See APOA5 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (5159768..5161751, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (5119993..5121973, complement)

    Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene BUD13 homolog Neighboring gene BUD13 homolog Neighboring gene ZPR1 zinc finger Neighboring gene apolipoprotein A4 Neighboring gene microRNA mir-12250 Neighboring gene apolipoprotein C3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [Polymorphisms of chicken apoA5 gene and association with carcass traits of chickens]. Yao JF, et al. Yi Chuan, 2008 May. PMID 18487151
    2. Avian apolipoprotein A-V binds to LDL receptor gene family members. Dichlberger A, et al. J Lipid Res, 2007 Jul. PMID 17401111
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cholesterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylcholine-sterol O-acyltransferase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cholesterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cholesterol efflux IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cholesterol homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in high-density lipoprotein particle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid efflux IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of lipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reverse cholesterol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in triglyceride homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very-low-density lipoprotein particle remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in blood microparticle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chylomicron IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of high-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein A-V; apolipoprotein A5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5159768..5161751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_417939.8 → XP_417939.3  apolipoprotein A-V

      UniProtKB/TrEMBL
      A0A8V1A1W9, A0A8V1A756
      Related
      ENSGALP00010037175.1, ENSGALT00010060416.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5119993..5121973 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040690247.2 → XP_040546181.1  apolipoprotein A-V

      UniProtKB/TrEMBL
      A0A8V1A756
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials