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    MMP23A matrix metallopeptidase 23A (pseudogene) [ Gallus gallus (chicken) ]

    Gene ID: 419407, updated on 17-Aug-2024

    Summary

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    Symbol
    MMP23Aprovided by CGNC
    Full Name
    matrix metallopeptidase 23A (pseudogene)provided by CGNC
    Primary source
    CGNC:50988
    See related
    Ensembl:ENSGALG00010020187
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    MMP23B
    Orthologs
    human mouse all
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    Genomic context

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    See MMP23A in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (2022547..2039651, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (2049978..2071168, complement)

    Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC419404 Neighboring gene solute carrier family 35 member E2B Neighboring gene cell division cycle 2-like 1 (PITSLRE proteins) Neighboring gene mindbomb E3 ubiquitin protein ligase 2 Neighboring gene Golgi integral membrane protein 4-like Neighboring gene fibronectin type III domain containing 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    matrix metalloproteinase-23
    Names
    matrix metallopeptidase 23B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2022547..2039651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025142634.3 → XP_024998402.2  matrix metalloproteinase-23 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZC86
      Conserved Domains (4) summary
      smart00254
      Location:221 → 255
      ShKT; ShK toxin domain
      cd04278
      Location:53 → 220
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      cd00096
      Location:283 → 287
      Ig; Ig strand B [structural motif]
      cl11960
      Location:275 → 343
      Ig; Immunoglobulin domain

    2. XM_004947398.5 → XP_004947455.2  matrix metalloproteinase-23 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZC86
      Conserved Domains (4) summary
      smart00254
      Location:231 → 265
      ShKT; ShK toxin domain
      cd04278
      Location:63 → 230
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      cd00096
      Location:292 → 298
      Ig; Ig strand B [structural motif]
      cl11960
      Location:285 → 353
      Ig; Immunoglobulin domain

    3. XM_417569.6 → XP_417569.2  matrix metalloproteinase-23 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZC86, A0A8V0ZJP5
      Related
      ENSGALP00010028823.1, ENSGALT00010048760.1
      Conserved Domains (4) summary
      smart00254
      Location:265 → 299
      ShKT; ShK toxin domain
      cd04278
      Location:97 → 264
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      cd00096
      Location:326 → 332
      Ig; Ig strand B [structural motif]
      cl11960
      Location:319 → 387
      Ig; Immunoglobulin domain

    RNA

    1. XR_006931969.1 RNA Sequence

    2. XR_006931968.1 RNA Sequence

    3. XR_213526.5 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2049978..2071168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040689057.2 → XP_040544991.1  matrix metalloproteinase-23 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZC86
      Conserved Domains (4) summary
      smart00254
      Location:221 → 255
      ShKT; ShK toxin domain
      cd04278
      Location:53 → 220
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      cd00096
      Location:282 → 288
      Ig; Ig strand B [structural motif]
      cl11960
      Location:275 → 343
      Ig; Immunoglobulin domain

    2. XM_040689056.2 → XP_040544990.1  matrix metalloproteinase-23 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZC86
      Conserved Domains (4) summary
      smart00254
      Location:231 → 265
      ShKT; ShK toxin domain
      cd04278
      Location:63 → 230
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      cd00096
      Location:292 → 298
      Ig; Ig strand B [structural motif]
      cl11960
      Location:285 → 353
      Ig; Immunoglobulin domain

    3. XM_040689055.2 → XP_040544989.1  matrix metalloproteinase-23 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZC86
      Conserved Domains (4) summary
      smart00254
      Location:265 → 299
      ShKT; ShK toxin domain
      cd04278
      Location:97 → 264
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      cd00096
      Location:326 → 332
      Ig; Ig strand B [structural motif]
      cl11960
      Location:319 → 387
      Ig; Immunoglobulin domain

    RNA

    1. XR_006936872.1 RNA Sequence

    2. XR_006936870.1 RNA Sequence

    3. XR_005855580.2 RNA Sequence

    4. XR_006936871.1 RNA Sequence

    5. XR_006936869.1 RNA Sequence

    6. XR_005855579.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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