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    CNOT4 CCR4-NOT transcription complex subunit 4 [ Gallus gallus (chicken) ]

    Gene ID: 417936, updated on 17-Aug-2024

    Summary

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    Symbol
    CNOT4provided by CGNC
    Full Name
    CCR4-NOT transcription complex subunit 4provided by CGNC
    Primary source
    CGNC:8877
    See related
    Ensembl:ENSGALG00010010111
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CNOT4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (47817607..47888319)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (48114705..48185598)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 1 Neighboring gene nucleoporin 205 Neighboring gene uncharacterized LOC107053813 Neighboring gene solute carrier family 23 member 1-like Neighboring gene stimulated by retinoic acid 8 Neighboring gene WD repeat domain 91

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 4
    NP_001012829.1
    XP_015140269.1
    XP_015140277.1
    XP_015140283.1
    XP_015140291.1
    XP_015140293.1
    XP_015140298.1
    XP_015140304.1
    XP_040552062.2
    XP_040552067.2
    XP_040552078.2
    XP_040552084.2
    XP_040552090.2
    XP_040552096.2
    XP_040552115.2
    XP_040552126.2
    XP_040552160.1
    XP_046763337.1
    XP_046763338.1
    XP_046763339.1
    XP_046763340.1
    XP_046763341.1
    XP_046763342.1
    XP_046763343.1
    XP_046763344.1
    XP_046763345.1
    XP_046763346.1
    XP_046763347.1
    XP_046763348.1
    XP_046763349.1
    XP_046763350.1
    XP_046763351.1
    XP_046763352.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012811.2 → NP_001012829.1  CCR4-NOT transcription complex subunit 4

      See identical proteins and their annotated locations for NP_001012829.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000012
      UniProtKB/TrEMBL
      E1C4B3, Q5ZJC9
      Conserved Domains (1) summary
      COG5175
      Location:14 → 350
      MOT2; Transcriptional repressor [Transcription]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      47817607..47888319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015284783.4 → XP_015140269.1  CCR4-NOT transcription complex subunit 4 isoform X7

      UniProtKB/TrEMBL
      A0A8V0YCM1
      Related
      ENSGALP00010013696.1, ENSGALT00010024024.1
      Conserved Domains (2) summary
      COG5175
      Location:14 → 353
      MOT2; Transcriptional repressor [Transcription]
      pfam05109
      Location:272 → 522
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_015284807.4 → XP_015140293.1  CCR4-NOT transcription complex subunit 4 isoform X12

      Conserved Domains (2) summary
      COG5175
      Location:14 → 353
      MOT2; Transcriptional repressor [Transcription]
      pfam05109
      Location:272 → 522
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    3. XM_015284797.4 → XP_015140283.1  CCR4-NOT transcription complex subunit 4 isoform X10

      Conserved Domains (1) summary
      COG5175
      Location:14 → 322
      MOT2; Transcriptional repressor [Transcription]

    4. XM_015284812.4 → XP_015140298.1  CCR4-NOT transcription complex subunit 4 isoform X14

      Conserved Domains (1) summary
      COG5175
      Location:14 → 322
      MOT2; Transcriptional repressor [Transcription]

    5. XM_040696226.2 → XP_040552160.1  CCR4-NOT transcription complex subunit 4 isoform X13

      UniProtKB/TrEMBL
      A0A3Q2TW86
      Related
      ENSGALP00010013692.1, ENSGALT00010024010.1
      Conserved Domains (2) summary
      COG5175
      Location:14 → 350
      MOT2; Transcriptional repressor [Transcription]
      pfam05109
      Location:267 → 519
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    6. XM_015284805.4 → XP_015140291.1  CCR4-NOT transcription complex subunit 4 isoform X11

      Conserved Domains (1) summary
      COG5175
      Location:14 → 319
      MOT2; Transcriptional repressor [Transcription]

    7. XM_015284818.4 → XP_015140304.1  CCR4-NOT transcription complex subunit 4 isoform X15

      Conserved Domains (1) summary
      COG5175
      Location:14 → 319
      MOT2; Transcriptional repressor [Transcription]

    8. XM_015284791.4 → XP_015140277.1  CCR4-NOT transcription complex subunit 4 isoform X7

      UniProtKB/TrEMBL
      A0A8V0YCM1
      Conserved Domains (2) summary
      COG5175
      Location:14 → 353
      MOT2; Transcriptional repressor [Transcription]
      pfam05109
      Location:272 → 522
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    9. XM_040696128.2 → XP_040552062.2  CCR4-NOT transcription complex subunit 4 isoform X1

    10. XM_040696156.2 → XP_040552090.2  CCR4-NOT transcription complex subunit 4 isoform X5

    11. XM_040696144.2 → XP_040552078.2  CCR4-NOT transcription complex subunit 4 isoform X3

    12. XM_040696181.2 → XP_040552115.2  CCR4-NOT transcription complex subunit 4 isoform X8

    13. XM_040696133.2 → XP_040552067.2  CCR4-NOT transcription complex subunit 4 isoform X2

    14. XM_040696162.2 → XP_040552096.2  CCR4-NOT transcription complex subunit 4 isoform X6

    15. XM_040696150.2 → XP_040552084.2  CCR4-NOT transcription complex subunit 4 isoform X4

    16. XM_040696192.2 → XP_040552126.2  CCR4-NOT transcription complex subunit 4 isoform X9

      UniProtKB/TrEMBL
      A0A8V0XZG2
      Related
      ENSGALP00010013695.1, ENSGALT00010024018.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      48114705..48185598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907387.1 → XP_046763343.1  CCR4-NOT transcription complex subunit 4 isoform X7

      UniProtKB/TrEMBL
      A0A8V0YCM1

    2. XM_046907393.1 → XP_046763349.1  CCR4-NOT transcription complex subunit 4 isoform X12

    3. XM_046907390.1 → XP_046763346.1  CCR4-NOT transcription complex subunit 4 isoform X10

    4. XM_046907395.1 → XP_046763351.1  CCR4-NOT transcription complex subunit 4 isoform X14

    5. XM_046907394.1 → XP_046763350.1  CCR4-NOT transcription complex subunit 4 isoform X13

      UniProtKB/TrEMBL
      A0A3Q2TW86

    6. XM_046907391.1 → XP_046763347.1  CCR4-NOT transcription complex subunit 4 isoform X11

    7. XM_046907396.1 → XP_046763352.1  CCR4-NOT transcription complex subunit 4 isoform X15

    8. XM_046907392.1 → XP_046763348.1  CCR4-NOT transcription complex subunit 4 isoform X7

      UniProtKB/TrEMBL
      A0A8V0YCM1

    9. XM_046907381.1 → XP_046763337.1  CCR4-NOT transcription complex subunit 4 isoform X1

    10. XM_046907385.1 → XP_046763341.1  CCR4-NOT transcription complex subunit 4 isoform X5

    11. XM_046907383.1 → XP_046763339.1  CCR4-NOT transcription complex subunit 4 isoform X3

    12. XM_046907388.1 → XP_046763344.1  CCR4-NOT transcription complex subunit 4 isoform X8

    13. XM_046907382.1 → XP_046763338.1  CCR4-NOT transcription complex subunit 4 isoform X2

    14. XM_046907386.1 → XP_046763342.1  CCR4-NOT transcription complex subunit 4 isoform X6

    15. XM_046907384.1 → XP_046763340.1  CCR4-NOT transcription complex subunit 4 isoform X4

    16. XM_046907389.1 → XP_046763345.1  CCR4-NOT transcription complex subunit 4 isoform X9

    Nucleotide Protein Strain
    Heading Accession and Version

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