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    SLC31A1 solute carrier family 31 member 1 [ Gallus gallus (chicken) ]

    Gene ID: 417268, updated on 10-Oct-2024

    Summary

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    Symbol
    SLC31A1provided by CGNC
    Full Name
    solute carrier family 31 member 1provided by CGNC
    Primary source
    CGNC:6713
    See related
    Ensembl:ENSGALG00010027953
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC31A1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (2151949..2176049, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (1560203..1584303, complement)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 31 Neighboring gene pre-mRNA processing factor 4 Neighboring gene cell division cycle 26 Neighboring gene FK506 binding protein 15 Neighboring gene uncharacterized LOC112529973

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in copper ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high affinity copper uptake protein 1
    Names
    solute carrier family 31 (copper transporter), member 1
    solute carrier family 31 (copper transporters), member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305656.2 → NP_001292585.1  high affinity copper uptake protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001292585.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1. Variants 1, 2, 3 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1AGL6
      Conserved Domains (1) summary
      pfam04145
      Location:40 → 168
      Ctr; Ctr copper transporter family

    2. NM_001305657.2 → NP_001292586.1  high affinity copper uptake protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001292586.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1AGL6
      Conserved Domains (1) summary
      pfam04145
      Location:40 → 168
      Ctr; Ctr copper transporter family

    3. NM_001305658.2 → NP_001292587.1  high affinity copper uptake protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001292587.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1AGL6
      Conserved Domains (1) summary
      pfam04145
      Location:40 → 168
      Ctr; Ctr copper transporter family

    4. NM_001305659.2 → NP_001292588.1  high affinity copper uptake protein 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) contains an alternate 5'-most exon and uses an alternate translation start site, compared to variant 1. It encodes isoform 2, which has a longer and distinct N-terminus, compared to isoform 1.
      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1AIH0
      Related
      ENSGALP00010041502.1, ENSGALT00010067759.1
      Conserved Domains (1) summary
      pfam04145
      Location:71 → 199
      Ctr; Ctr copper transporter family

    5. NM_001305660.2 → NP_001292589.1  high affinity copper uptake protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001292589.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1AGL6
      Conserved Domains (1) summary
      pfam04145
      Location:40 → 168
      Ctr; Ctr copper transporter family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2151949..2176049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046901796.1 → XP_046757752.1  high affinity copper uptake protein 1 isoform X1

    2. XM_046901798.1 → XP_046757754.1  high affinity copper uptake protein 1 isoform X2

      Related
      ENSGALP00010041499.1, ENSGALT00010067756.1

    3. XM_025156080.3 → XP_025011848.1  high affinity copper uptake protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AGL6
      Conserved Domains (1) summary
      pfam04145
      Location:40 → 168
      Ctr; Ctr copper transporter family

    4. XM_046901797.1 → XP_046757753.1  high affinity copper uptake protein 1 isoform X2

    5. XM_015279516.4 → XP_015135002.1  high affinity copper uptake protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AGL6
      Conserved Domains (1) summary
      pfam04145
      Location:40 → 168
      Ctr; Ctr copper transporter family

    6. XM_046901801.1 → XP_046757757.1  high affinity copper uptake protein 1 isoform X2

    7. XM_046901799.1 → XP_046757755.1  high affinity copper uptake protein 1 isoform X2

    8. XM_046901800.1 → XP_046757756.1  high affinity copper uptake protein 1 isoform X2

    9. XM_025156084.3 → XP_025011852.1  high affinity copper uptake protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AGL6
      Related
      ENSGALP00010041492.1, ENSGALT00010067749.1
      Conserved Domains (1) summary
      pfam04145
      Location:40 → 168
      Ctr; Ctr copper transporter family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1560203..1584303 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046929021.1 → XP_046784977.1  high affinity copper uptake protein 1 isoform X1

    2. XM_046929025.1 → XP_046784981.1  high affinity copper uptake protein 1 isoform X2

    3. XM_046929028.1 → XP_046784984.1  high affinity copper uptake protein 1 isoform X2

    4. XM_046929024.1 → XP_046784980.1  high affinity copper uptake protein 1 isoform X2

    5. XM_046929022.1 → XP_046784978.1  high affinity copper uptake protein 1 isoform X2

    6. XM_046929029.1 → XP_046784985.1  high affinity copper uptake protein 1 isoform X2

    7. XM_046929026.1 → XP_046784982.1  high affinity copper uptake protein 1 isoform X2

    8. XM_046929027.1 → XP_046784983.1  high affinity copper uptake protein 1 isoform X2

    9. XM_046929023.1 → XP_046784979.1  high affinity copper uptake protein 1 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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