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    PATZ1 POZ/BTB and AT hook containing zinc finger 1 [ Gallus gallus (chicken) ]

    Gene ID: 416963, updated on 17-Aug-2024

    Summary

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    Symbol
    PATZ1provided by CGNC
    Full Name
    POZ/BTB and AT hook containing zinc finger 1provided by CGNC
    Primary source
    CGNC:5234
    See related
    Ensembl:ENSGALG00010022649
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ZNF278
    Orthologs
    human mouse all
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    Genomic context

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    See PATZ1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (9020731..9044909)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (9031270..9055482)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E nuclear import factor 1 Neighboring gene developmentally regulated GTP binding protein 1 Neighboring gene uncharacterized LOC124417232 Neighboring gene phosphoinositide-3-kinase interacting protein 1 Neighboring gene uncharacterized LOC121106862 Neighboring gene LIM domain kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POZ-, AT hook-, and zinc finger-containing protein 1
    Names
    zinc finger protein 278

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9020731..9044909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004934372.5 → XP_004934429.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Conserved Domains (7) summary
      COG5048
      Location:384 → 530
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:633 → 654
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:563 → 630
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:511 → 552
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    2. XM_004934374.5 → XP_004934431.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Conserved Domains (7) summary
      COG5048
      Location:384 → 529
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:632 → 653
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:562 → 629
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:510 → 551
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    3. XM_004934376.5 → XP_004934433.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X6

      Conserved Domains (4) summary
      COG5048
      Location:360 → 411
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam15909
      Location:385 → 464
      zf-C2H2_8; C2H2-type zinc ribbon

    4. XM_004934371.5 → XP_004934428.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PMX5, A0A8V0ZR53
      Related
      ENSGALP00010033319.1, ENSGALT00010055097.1
      Conserved Domains (7) summary
      COG5048
      Location:384 → 530
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:634 → 655
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:563 → 631
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:511 → 552
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    5. XM_004934373.5 → XP_004934430.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Conserved Domains (7) summary
      COG5048
      Location:384 → 529
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:633 → 654
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:562 → 630
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:510 → 551
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    6. XM_001232641.7 → XP_001232642.2  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Related
      ENSGALP00010033315.1, ENSGALT00010055093.1
      Conserved Domains (6) summary
      COG5048
      Location:384 → 521
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:610 → 631
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:539 → 607
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9031270..9055482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040684850.2 → XP_040540784.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PMX5, A0A8V0ZR53
      Conserved Domains (7) summary
      COG5048
      Location:384 → 530
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:634 → 655
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:563 → 631
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:511 → 552
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    2. XM_040684851.2 → XP_040540785.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Conserved Domains (7) summary
      COG5048
      Location:384 → 530
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:633 → 654
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:563 → 630
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:511 → 552
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    3. XM_040684852.2 → XP_040540786.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Conserved Domains (7) summary
      COG5048
      Location:384 → 529
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:633 → 654
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:562 → 630
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:510 → 551
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    4. XM_040684853.2 → XP_040540787.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Conserved Domains (7) summary
      COG5048
      Location:384 → 529
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:632 → 653
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:562 → 629
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
      cd20908
      Location:510 → 551
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    5. XM_040684854.2 → XP_040540788.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZR53
      Conserved Domains (6) summary
      COG5048
      Location:384 → 521
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:610 → 631
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam00096
      Location:360 → 380
      zf-C2H2; Zinc finger, C2H2 type
      pfam16637
      Location:539 → 607
      zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

    6. XM_040684855.2 → XP_040540789.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X6

      Conserved Domains (4) summary
      COG5048
      Location:360 → 411
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18207
      Location:16 → 169
      BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
      pfam15909
      Location:385 → 464
      zf-C2H2_8; C2H2-type zinc ribbon
    Nucleotide Protein Strain
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