DCAF1 DDB1 and CUL4 associated factor 1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: DCAF1provided by CGNC
Full Name: DDB1 and CUL4 associated factor 1provided by CGNC
Primary source: CGNC:1711
See related: Ensembl:ENSGALG00010028159
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: VPRBP
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 29

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	12	NC_052543.1 (2332578..2381565, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	12	NC_052584.1 (2387157..2436317, complement)

Chromosome 12 - NC_052543.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables histone H2AT120 kinase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables nuclear estrogen receptor binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of Cul4-RING E3 ubiquitin ligase complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein VPRBP; DDB1- and CUL4-associated factor 1

Names: Vpr (HIV-1) binding protein; Vpr-binding protein

XP_004944459.1

EC 2.7.11.1

XP_015148390.1

EC 2.7.11.1

XP_015148391.1

EC 2.7.11.1

XP_015148392.1

EC 2.7.11.1

XP_040502430.1

EC 2.7.11.1

XP_040502431.1

EC 2.7.11.1

XP_040537721.1

EC 2.7.11.1

XP_040537722.1

EC 2.7.11.1

XP_040537723.1

EC 2.7.11.1

XP_040537725.1

EC 2.7.11.1

XP_040537726.1

EC 2.7.11.1

XP_040537727.1

EC 2.7.11.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

2332578..2381565 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015292904.2 → XP_015148390.1 DDB1- and CUL4-associated factor 1 isoform X2

UniProtKB/TrEMBL

A0A1D5NW92

Related

ENSGALP00010041975.1, ENSGALT00010068232.1

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_004944402.4 → XP_004944459.1 DDB1- and CUL4-associated factor 1 isoform X1

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_015292905.2 → XP_015148391.1 DDB1- and CUL4-associated factor 1 isoform X3

UniProtKB/TrEMBL

A0A1D5NW92

Related

ENSGALP00010041973.1, ENSGALT00010068230.1

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_040646496.1 → XP_040502430.1 DDB1- and CUL4-associated factor 1 isoform X5

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_040646497.2 → XP_040502431.1 DDB1- and CUL4-associated factor 1 isoform X6

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_015292906.4 → XP_015148392.1 DDB1- and CUL4-associated factor 1 isoform X4

UniProtKB/TrEMBL

A0A1D5NW92, A0A1D5PF43

Related

ENSGALP00010041971.1, ENSGALT00010068228.1

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

2387157..2436317 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040681788.1 → XP_040537722.1 DDB1- and CUL4-associated factor 1 isoform X2

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_040681787.2 → XP_040537721.1 DDB1- and CUL4-associated factor 1 isoform X1

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_040681789.1 → XP_040537723.1 DDB1- and CUL4-associated factor 1 isoform X3

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_040681791.1 → XP_040537725.1 DDB1- and CUL4-associated factor 1 isoform X4

UniProtKB/TrEMBL

A0A1D5NW92, A0A1D5PF43

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_040681792.1 → XP_040537726.1 DDB1- and CUL4-associated factor 1 isoform X5

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_040681793.2 → XP_040537727.1 DDB1- and CUL4-associated factor 1 isoform X6

UniProtKB/TrEMBL

A0A1D5NW92

Conserved Domains (2) summary

sd00039
Location:1093 → 1129

7WD40; WD40 repeat [structural motif]

cl29593
Location:1089 → 1286

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...