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    TOX3 TOX high mobility group box family member 3 [ Gallus gallus (chicken) ]

    Gene ID: 415724, updated on 10-Oct-2024

    Summary

    Symbol
    TOX3provided by CGNC
    Full Name
    TOX high mobility group box family member 3provided by CGNC
    Primary source
    CGNC:2730
    See related
    Ensembl:ENSGALG00010024523
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TNRC9
    Orthologs
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    Genomic context

    See TOX3 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (4744877..4990194)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (5199857..5332047)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111688 Neighboring gene RB transcriptional corepressor like 2 Neighboring gene chromodomain helicase DNA binding protein 9 Neighboring gene uncharacterized LOC121111692 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112533269 Neighboring gene uncharacterized LOC121111693 Neighboring gene uncharacterized LOC121111694

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    TOX high mobility group box family member 3
    Names
    trinucleotide repeat containing 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277137.2NP_001264066.1  TOX high mobility group box family member 3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (1).
      Source sequence(s)
      JAENSK010000248
      UniProtKB/TrEMBL
      A0A1D5PEI4, A0A8V0ZY28
      Related
      ENSGALP00010036595.1, ENSGALT00010059835.1
      Conserved Domains (1) summary
      cd00084
      Location:260325
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    2. NM_001277138.2NP_001264067.2  TOX high mobility group box family member 3 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region and uses an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct and shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      JAENSK010000248
      UniProtKB/TrEMBL
      A0A8V1A275
      Related
      ENSGALP00010036597.1, ENSGALT00010059837.1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4744877..4990194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046899430.1XP_046755386.1  TOX high mobility group box family member 3 isoform X3

    2. XM_046899432.1XP_046755388.1  TOX high mobility group box family member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A5L1
      Related
      ENSGALP00010036600.1, ENSGALT00010059841.1
    3. XM_046899431.1XP_046755387.1  TOX high mobility group box family member 3 isoform X1

      Related
      ENSGALP00010036594.1, ENSGALT00010059834.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5199857..5332047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046925475.1XP_046781431.1  TOX high mobility group box family member 3 isoform X2

    2. XM_046925474.1XP_046781430.1  TOX high mobility group box family member 3 isoform X1