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    SLC22A6 solute carrier family 22 member 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 407180, updated on 4-Oct-2024

    Summary

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    Gene symbol
    SLC22A6
    Gene description
    solute carrier family 22 member 6
    See related
    BGD:BT19880; Ensembl:ENSBTAG00000013642
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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    Genomic context

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    See SLC22A6 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (41285418..41293426, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene cholinergic receptor muscarinic 1 Neighboring gene solute carrier family 22 member 6 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene solute carrier family 22 member 8 Neighboring gene solute carrier family 22 member 10-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sodium-independent organic anion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in organic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier family 22 member 6
    Names
    ROAT1
    organic anion transporter 1
    renal organic anion transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001143.2 → NP_001001143.1  solute carrier family 22 member 6

      See identical proteins and their annotated locations for NP_001001143.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021760
      UniProtKB/Swiss-Prot
      A7E342, Q864Z3
      UniProtKB/TrEMBL
      F1MIJ1
      Related
      ENSBTAP00000018132.4, ENSBTAT00000018132.5
      Conserved Domains (2) summary
      cd06174
      Location:135 → 505
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      TIGR00898
      Location:11 → 515
      2A0119; cation transport protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      41285418..41293426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010820997.4 → XP_010819299.2  solute carrier family 22 member 6 isoform X1

      UniProtKB/Swiss-Prot
      A7E342, Q864Z3
      Conserved Domains (1) summary
      TIGR00898
      Location:11 → 454
      2A0119; cation transport protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q864Z3.2 GenPept UniProtKB/Swiss-Prot:Q864Z3

    Gene LinkOut

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