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    DCN decorin [ Canis lupus familiaris (dog) ]

    Gene ID: 403904, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DCNprovided by VGNC
    Official Full Name
    decorinprovided by VGNC
    Primary source
    VGNC:VGNC:54200
    See related
    Ensembl:ENSCAFG00845019761
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See DCN in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (32489958..32545511, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (32288559..32331901, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (32139738..32182940, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (31782615..31825998, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (31846288..31889835, complement)

    Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene keratocan Neighboring gene lumican Neighboring gene ATP synthase subunit d, mitochondrial-like Neighboring gene uncharacterized LOC111090029

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene-specific universal mammalian sequence-tagged sites: application to the canine genome. Venta PJ, et al. Biochem Genet, 1996 Aug. PMID 8894053

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    decorin
    Names
    PG-S2
    bone proteoglycan II

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003228.1 → NP_001003228.1  decorin precursor

      See identical proteins and their annotated locations for NP_001003228.1

      Status: PROVISIONAL

      Source sequence(s)
      U83141
      UniProtKB/Swiss-Prot
      Q29393
      UniProtKB/TrEMBL
      A0A8C0LHT0, A0A8C0NJS2
      Conserved Domains (3) summary
      PRK15370
      Location:71 → 299
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:63 → 83
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01462
      Location:55 → 81
      LRRNT; Leucine rich repeat N-terminal domain

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051819.1 Reference ROS_Cfam_1.0

      Range
      32489958..32545511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038687171.1 → XP_038543099.1  decorin isoform X1

      UniProtKB/Swiss-Prot
      Q29393
      UniProtKB/TrEMBL
      A0A8C0LHT0, A0A8C0NJS2
      Conserved Domains (3) summary
      PRK15370
      Location:71 → 299
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:63 → 83
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01462
      Location:55 → 81
      LRRNT; Leucine rich repeat N-terminal domain

    2. XM_038687169.1 → XP_038543097.1  decorin isoform X1

      UniProtKB/Swiss-Prot
      Q29393
      UniProtKB/TrEMBL
      A0A8C0LHT0, A0A8C0NJS2
      Related
      ENSCAFP00845027407.1, ENSCAFT00845035000.1
      Conserved Domains (3) summary
      PRK15370
      Location:71 → 299
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:63 → 83
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01462
      Location:55 → 81
      LRRNT; Leucine rich repeat N-terminal domain

    3. XM_038687170.1 → XP_038543098.1  decorin isoform X1

      UniProtKB/Swiss-Prot
      Q29393
      UniProtKB/TrEMBL
      A0A8C0LHT0, A0A8C0NJS2
      Conserved Domains (3) summary
      PRK15370
      Location:71 → 299
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:63 → 83
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01462
      Location:55 → 81
      LRRNT; Leucine rich repeat N-terminal domain

    4. XM_038687168.1 → XP_038543096.1  decorin isoform X1

      UniProtKB/Swiss-Prot
      Q29393
      UniProtKB/TrEMBL
      A0A8C0LHT0, A0A8C0NJS2
      Conserved Domains (3) summary
      PRK15370
      Location:71 → 299
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:63 → 83
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01462
      Location:55 → 81
      LRRNT; Leucine rich repeat N-terminal domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049275.1 Alternate UMICH_Zoey_3.1

      Range
      31782615..31825998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

      Range
      31846288..31889835 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

      Range
      32139738..32182940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      32288559..32331901 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q29393.2 GenPept UniProtKB/Swiss-Prot:Q29393

    Gene LinkOut

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