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    PDE6D phosphodiesterase 6D [ Canis lupus familiaris (dog) ]

    Gene ID: 403781, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PDE6Dprovided by VGNC
    Official Full Name
    phosphodiesterase 6Dprovided by VGNC
    Primary source
    VGNC:VGNC:44360
    See related
    Ensembl:ENSCAFG00845024260
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PDE6D in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (43839352..43893418, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (44077007..44130324, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (43766160..43819583, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (43767671..43820847, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (43611021..43664227, complement)

    Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865964 Neighboring gene prothymosin alpha Neighboring gene COP9 signalosome subunit 7B Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization and mapping of canine cGMP-phosphodiesterase delta subunit (PDE6D). Wang W, et al. Gene, 1999 Aug 20. PMID 10452952

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sensory perception of light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
    Names
    GMP-PDE delta
    cGMP-phosphodiesterase delta subunit
    pde6D gene for cGMP-phosphodiesterase delta subunit
    NP_001003156.1
    XP_038290451.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003156.1 → NP_001003156.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

      See identical proteins and their annotated locations for NP_001003156.1

      Status: PROVISIONAL

      Source sequence(s)
      AF109151
      UniProtKB/Swiss-Prot
      Q9XT54
      UniProtKB/TrEMBL
      A0A8C0LFK1
      Related
      ENSCAFP00845033577.1, ENSCAFT00845042834.1
      Conserved Domains (1) summary
      pfam05351
      Location:10 → 149
      GMP_PDE_delta; GMP-PDE, delta subunit

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051829.1 Reference ROS_Cfam_1.0

      Range
      43839352..43893418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038434523.1 → XP_038290451.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1

      Conserved Domains (1) summary
      pfam05351
      Location:1 → 130
      GMP_PDE_delta; GMP-PDE, delta subunit

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049285.1 Alternate UMICH_Zoey_3.1

      Range
      43767671..43820847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

      Range
      43611021..43664227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

      Range
      43766160..43819583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      44077007..44130324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XT54.1 GenPept UniProtKB/Swiss-Prot:Q9XT54

    Gene LinkOut

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