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    Tigd4 tigger transposable element derived 4 [ Mus musculus (house mouse) ]

    Gene ID: 403175, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Tigd4provided by MGI
    Official Full Name
    tigger transposable element derived 4provided by MGI
    Primary source
    MGI:MGI:2685264
    See related
    Ensembl:ENSMUSG00000047819 AllianceGenome:MGI:2685264
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm418; C130063O11Rik
    Summary
    Predicted to enable DNA binding activity. Predicted to be active in nucleus. Is expressed in diaphragm; tongue muscle; and vertebral axis musculature. Orthologous to human TIGD4 (tigger transposable element derived 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Tigd4 in Genome Data Viewer
    Location:
    3 F1; 3 37.7 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (84500881..84504339)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (84593574..84597032)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor interacting protein 1 Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene, 35410 Neighboring gene predicted gene, 46836 Neighboring gene STARR-seq mESC enhancer starr_08087 Neighboring gene STARR-seq mESC enhancer starr_08088 Neighboring gene STARR-positive B cell enhancer mm9_chr3:84457727-84458028 Neighboring gene STARR-positive B cell enhancer ABC_E1263 Neighboring gene transmembrane protein 154 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:84485598-84485953

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FBXW7 mutations typically found in human cancers are distinct from null alleles and disrupt lung development. Davis H, et al. J Pathol, 2011 Jun. PMID 21503901, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tigger transposable element-derived protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207278.2 → NP_997161.1  tigger transposable element-derived protein 4

      See identical proteins and their annotated locations for NP_997161.1

      Status: VALIDATED

      Source sequence(s)
      AC102224
      Consensus CDS
      CCDS17439.1
      UniProtKB/Swiss-Prot
      Q8BUZ3
      Related
      ENSMUSP00000052320.4, ENSMUST00000062623.4
      Conserved Domains (3) summary
      pfam03221
      Location:84 → 143
      HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
      cl21459
      Location:16 → 67
      HTH; Helix-turn-helix domains
      cl21549
      Location:211 → 375
      rve; Integrase core domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      84500881..84504339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BUZ3.1 GenPept UniProtKB/Swiss-Prot:Q8BUZ3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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