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    NAPRT nicotinate phosphoribosyltransferase [ Sus scrofa (pig) ]

    Gene ID: 403161, updated on 5-Mar-2024

    Summary

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    Gene symbol
    NAPRT
    Gene description
    nicotinate phosphoribosyltransferase
    See related
    Ensembl:ENSSSCG00000055397
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    NAPRT1
    Expression
    Broad expression in kidney (RPKM 65.0), liver (RPKM 32.5) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See NAPRT in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (983428..986750)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene tigger transposable element derived 5 Neighboring gene eukaryotic translation elongation factor 1 delta Neighboring gene maestro heat like repeat family member 6 Neighboring gene gasdermin D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_010446.5 Chromosome 4 Reference Sscrofa11.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nicotinate phosphoribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NAD biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nicotinate phosphoribosyltransferase
    Names
    nicotinate phosphoribosyltransferase domain containing 1
    nicotinate phosphoribosyltransferase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      983428..986750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021090465.1 → XP_020946124.1  nicotinate phosphoribosyltransferase isoform X1

      UniProtKB/TrEMBL
      A0A8D1CPV6, A0A8D2BAN0, M3TYR7
      Related
      ENSSSCP00000047420.3, ENSSSCT00000049946.3
      Conserved Domains (1) summary
      cl28369
      Location:15 → 525
      PncB; Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]

    2. XM_021090466.1 → XP_020946125.1  nicotinate phosphoribosyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A480LPY8, A0A8D1CPV6
      Conserved Domains (1) summary
      cl28369
      Location:15 → 512
      PncB; Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
    Nucleotide Protein Strain
    Heading Accession and Version

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