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    LOC399900 uncharacterized LOC399900 [ Homo sapiens (human) ]

    Gene ID: 399900, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC399900
    Gene description
    uncharacterized LOC399900
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC399900 in Genome Data Viewer
    Location:
    11q12.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (61967294..61968879)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (61956119..61957719)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (61734766..61736351)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene RAB3A interacting protein like 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:61705992-61706140 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:61709325-61709979 Neighboring gene RNA, U6 small nuclear 1243, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:61711149-61711650 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:61713521-61713684 Neighboring gene uncharacterized LOC107984334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4806 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3410 Neighboring gene bestrophin 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4807 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4808 Neighboring gene NFE2L2 motif-containing MPRA enhancer 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4809 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:61745853-61746069 Neighboring gene ferritin heavy chain 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:61768209-61768961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61780893-61781393 Neighboring gene ribosomal protein S2 pseudogene 37 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4810 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:61797863-61798406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61798407-61798950 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:61811723-61812922 Neighboring gene long intergenic non-protein coding RNA 2733

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187560.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP003733

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      61967294..61968879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      61956119..61957719
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013667.1: Suppressed sequence

      Description
      NM_001013667.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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