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    ADIPOQ adiponectin, C1Q and collagen domain containing [ Sus scrofa (pig) ]

    Gene ID: 397660, updated on 17-Aug-2024

    Summary

    Official Symbol
    ADIPOQprovided by VGNC
    Official Full Name
    adiponectin, C1Q and collagen domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:85140
    See related
    Ensembl:ENSSSCG00000039103
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    ADN; ACDC; APM1; ACRP30
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Restricted expression toward subcutaneous adipose (RPKM 2159.7) See more
    Orthologs
    NEW
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    Genomic context

    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (124633906..124646237)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (134076753..134077342, complement)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene kininogen 1 Neighboring gene eukaryotic translation initiation factor 4A2 Neighboring gene replication factor C subunit 4 Neighboring gene uncharacterized LOC102158991 Neighboring gene AP-3 complex subunit sigma-1 pseudogene Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214370.1NP_999535.1  adiponectin precursor

      See identical proteins and their annotated locations for NP_999535.1

      Status: PROVISIONAL

      Source sequence(s)
      AY135647
      UniProtKB/TrEMBL
      A0A8D1MJG3, A0A8D1XIM8, B1Q0K4, Q3Y4D7, Q6PP07, Q7YRF8
      Related
      ENSSSCP00000045756.1, ENSSSCT00000047495.3
      Conserved Domains (2) summary
      smart00110
      Location:105241
      C1Q; Complement component C1q domain
      pfam01391
      Location:41105
      Collagen; Collagen triple helix repeat (20 copies)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      124633906..124646237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)