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    CNN2 calponin 2 [ Sus scrofa (pig) ]

    Gene ID: 397565, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CNN2provided by VGNC
    Official Full Name
    calponin 2provided by VGNC
    Primary source
    VGNC:VGNC:99619
    See related
    Ensembl:ENSSSCG00000039542
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    Calponin-2
    Expression
    Broad expression in ovary (RPKM 132.8), spleen (RPKM 111.1) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CNN2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (77376020..77385594, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (77612076..77621630)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 45 Neighboring gene ATP binding cassette subfamily A member 7 Neighboring gene transmembrane protein 259 Neighboring gene glutamate ionotropic receptor NMDA type subunit 3B Neighboring gene WD repeat domain 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Mammalian calponin. Identification and expression of genetic variants. Strasser P, et al. FEBS Lett, 1993 Sep 6. PMID 8370452
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actomyosin structure organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: calponin-2
    Names
    h2-calponin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      77376020..77385594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003353959.3 → XP_003354007.2  LOW QUALITY PROTEIN: calponin-2

      UniProtKB/TrEMBL
      A0A4X1VU33
      Related
      ENSSSCP00000027795.4, ENSSSCT00000027330.4
      Conserved Domains (2) summary
      pfam00402
      Location:206 → 229
      Calponin; Calponin family repeat
      cl27700
      Location:19 → 190
      Calponin; Calponin family repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08094.1 GenPept UniProtKB/Swiss-Prot:Q08094

    Gene LinkOut

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