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    PSME2 proteasome activator subunit 2 [ Sus scrofa (pig) ]

    Gene ID: 397522, updated on 5-Mar-2024

    Summary

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    Gene symbol
    PSME2
    Gene description
    proteasome activator subunit 2
    See related
    Ensembl:ENSSSCG00000002004
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 169.8), lung (RPKM 99.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See PSME2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (75154570..75157871)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (80425857..80429167)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene REC8 meiotic recombination protein Neighboring gene interferon regulatory factor 9 Neighboring gene ER membrane protein complex subunit 9 Neighboring gene uncharacterized LOC110261592 Neighboring gene proteasome activator subunit 1 Neighboring gene fat storage inducing transmembrane protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Sequence characterization, polymorphism and chromosomal localizations of the porcine PSME1 and PSME2 genes. Wang YF, et al. Anim Genet, 2004 Oct. PMID 15373739
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endopeptidase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of G1/S transition of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome activator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome activator complex subunit 2
    Names
    PA28 beta subunit
    PA28b
    PA28beta
    proteasome (prosome, macropain) activator subunit 2 (PA28 beta)
    proteasome activator 28 beta subunit
    proteasome activator 28 subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214279.1 → NP_999444.1  proteasome activator complex subunit 2

      See identical proteins and their annotated locations for NP_999444.1

      Status: PROVISIONAL

      Source sequence(s)
      AF527991
      UniProtKB/Swiss-Prot
      Q863Z0
      UniProtKB/TrEMBL
      A0A4X1SN27, A0A8D0NHY6
      Related
      ENSSSCP00000062340.1, ENSSSCT00000090209.2
      Conserved Domains (2) summary
      pfam02251
      Location:13 → 65
      PA28_alpha; Proteasome activator pa28 alpha subunit
      pfam02252
      Location:96 → 237
      PA28_beta; Proteasome activator pa28 beta subunit

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      75154570..75157871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013978159.2 → XP_013833613.1  proteasome activator complex subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0A5G2QF42, A0A8D0NHA0
      Conserved Domains (1) summary
      pfam02252
      Location:75 → 216
      PA28_beta; Proteasome activator pa28 beta subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q863Z0.3 GenPept UniProtKB/Swiss-Prot:Q863Z0

    Gene LinkOut

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