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    UBC ubiquitin C [ Sus scrofa (pig) ]

    Gene ID: 396966, updated on 17-Aug-2024

    Summary

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    Official Symbol
    UBCprovided by VGNC
    Official Full Name
    ubiquitin Cprovided by VGNC
    Primary source
    VGNC:VGNC:94638
    See related
    Ensembl:ENSSSCG00000029226
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in longissimus dorsi muscle (RPKM 3459.4), psoas major muscle (RPKM 3091.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See UBC in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (28253857..28260771)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (29958861..29961533)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene scavenger receptor class B member 1 Neighboring gene nuclear receptor corepressor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. An mRNA encoding poly-ubiquitin in porcine corpus luteum: identification by cDNA cloning and sequencing. Einspanier R, et al. DNA, 1987 Oct. PMID 2824145
    2. Establishment of a partially informative porcine somatic cell hybrid panel and assignment of the loci for transition protein 2 (TNP2) and protamine 1 (PRM1) to chromosome 3 and polyubiquitin (UBC) to chromosome 14. Rettenberger G, et al. Genomics, 1994 Jun. PMID 7959732
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyubiquitin-C
    Names
    Polyubiquitin-C
    ubiquitin copy 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      28253857..28260771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021074017.1 → XP_020929676.1  polyubiquitin-C

      UniProtKB/TrEMBL
      A0A5G2QDJ2
      Conserved Domains (1) summary
      cd01803
      Location:153 → 228
      Ubiquitin

    2. XM_003483411.4 → XP_003483459.2  polyubiquitin-C

      UniProtKB/TrEMBL
      A0A5G2QDJ2
      Related
      ENSSSCP00000026622.3, ENSSSCT00000031057.3
      Conserved Domains (1) summary
      cd01803
      Location:153 → 228
      Ubiquitin

    3. XM_021074018.1 → XP_020929677.1  polyubiquitin-C

      UniProtKB/TrEMBL
      A0A5G2QDJ2
      Conserved Domains (1) summary
      cd01803
      Location:153 → 228
      Ubiquitin
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CG68.1 GenPept UniProtKB/Swiss-Prot:P0CG68

    Gene LinkOut

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