SERPINH1 serpin family H member 1 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: SERPINH1provided by VGNC
Official Full Name: serpin family H member 1provided by VGNC
Primary source: VGNC:VGNC:92746
See related: Ensembl:ENSSSCG00000039468
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: HSP47
Expression: Broad expression in ovary (RPKM 386.1), subcutaneous adipose (RPKM 310.0) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	9	NC_010451.4 (9782939..9794485)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	9	NC_010451.3 (10966800..10977248)

Chromosome 9 - NC_010451.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables collagen binding	IEA Inferred from Electronic Annotation more info	PubMed
enables serine-type endopeptidase inhibitor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in collagen fibril organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of endopeptidase activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: serpin H1

Names: heat shock protein 47; serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001244132.1 → NP_001231061.1 serpin H1 precursor

Status: PROVISIONAL

Source sequence(s)

AK347741

UniProtKB/TrEMBL

A0A480J4V6, A0A8D0SCN0

Related

ENSSSCP00000034354.1, ENSSSCT00000041679.3

Conserved Domains (1) summary

cd02046
Location:43 → 407

hsp47; Heat shock protein 47 (Hsp47), also called colligin, because of its collagen binding ability, is a chaperone specific for procollagen. It has been shown to be essential for collagen biosynthesis, but its exact function is still unclear. Hsp47 is a ...