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    LAMB1 laminin subunit beta 1 [ Sus scrofa (pig) ]

    Gene ID: 396707, updated on 5-Mar-2024

    Summary

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    Official Symbol
    LAMB1provided by VGNC
    Official Full Name
    laminin subunit beta 1provided by VGNC
    Primary source
    VGNC:VGNC:89620
    See related
    Ensembl:ENSSSCG00000015444
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in subcutaneous adipose (RPKM 118.8), kidney (RPKM 82.5) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See LAMB1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (107670120..107747242, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (118440049..118515695, complement)

    Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene polycomb group RING finger protein 1 pseudogene Neighboring gene uncharacterized LOC100623096 Neighboring gene dihydrolipoamide dehydrogenase Neighboring gene laminin subunit beta 4 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene neuronal cell adhesion molecule

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: laminin subunit beta-1
    Names
    laminin beta-1 chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

      Range
      107670120..107747242 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003130269.5 → XP_003130317.3  LOW QUALITY PROTEIN: laminin subunit beta-1

      UniProtKB/TrEMBL
      A0A8D0T0P0, F1SAE9
      Related
      ENSSSCP00000016375.4, ENSSSCT00000016825.4
      Conserved Domains (5) summary
      smart00180
      Location:773 → 818
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00055
      Location:509 → 548
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00053
      Location:821 → 869
      Laminin_EGF; Laminin EGF domain
      pfam00055
      Location:44 → 269
      Laminin_N; Laminin N-terminal (Domain VI)
      cl25732
      Location:1190 → 1778
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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