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    DCPS decapping enzyme, scavenger [ Sus scrofa (pig) ]

    Gene ID: 396689, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DCPSprovided by VGNC
    Official Full Name
    decapping enzyme, scavengerprovided by VGNC
    Primary source
    VGNC:VGNC:87189
    See related
    Ensembl:ENSSSCG00000015231
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    HINT-5
    Expression
    Ubiquitous expression in liver (RPKM 12.8), spleen (RPKM 10.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See DCPS in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (53400750..53437161)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (59064161..59100387)

    Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene FAD dependent oxidoreductase domain containing 1 Neighboring gene TIR domain containing adaptor protein Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene kirre like nephrin family adhesion molecule 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA 7-methylguanosine cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    m7GpppX diphosphatase
    Names
    DCS-1
    decapping scavenger enzyme
    hint-related 7meGMP-directed hydrolase
    histidine triad nucleotide-binding protein 5
    histidine triad protein member 5
    scavenger mRNA-decapping enzyme DcpS
    NP_998955.1
    XP_020957818.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213790.1 → NP_998955.1  m7GpppX diphosphatase

      See identical proteins and their annotated locations for NP_998955.1

      Status: PROVISIONAL

      Source sequence(s)
      AY040774
      UniProtKB/Swiss-Prot
      Q8MIZ3
      Related
      ENSSSCP00000016152.2, ENSSSCT00000016597.5
      Conserved Domains (3) summary
      COG5075
      Location:47 → 321
      COG5075; Uncharacterized conserved protein [Function unknown]
      pfam05652
      Location:45 → 146
      DcpS; Scavenger mRNA decapping enzyme (DcpS) N-terminal
      pfam11969
      Location:175 → 282
      DcpS_C; Scavenger mRNA decapping enzyme C-term binding

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

      Range
      53400750..53437161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021102159.1 → XP_020957818.1  m7GpppX diphosphatase isoform X1

      Conserved Domains (1) summary
      cl27009
      Location:47 → 244
      DcpS; Scavenger mRNA decapping enzyme (DcpS) N-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8MIZ3.1 GenPept UniProtKB/Swiss-Prot:Q8MIZ3

    Gene LinkOut

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