U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [ Sus scrofa (pig) ]

    Gene ID: 396602, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ST3GAL4provided by VGNC
    Official Full Name
    ST3 beta-galactoside alpha-2,3-sialyltransferase 4provided by VGNC
    Primary source
    VGNC:VGNC:93504
    See related
    Ensembl:ENSSSCG00000015232
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    ST3GAL-IV
    Expression
    Ubiquitous expression in lung (RPKM 4.4), spleen (RPKM 3.7) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ST3GAL4 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (53442795..53491847)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (59294217..59323671)

    Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene TIR domain containing adaptor protein Neighboring gene decapping enzyme, scavenger Neighboring gene kirre like nephrin family adhesion molecule 3 Neighboring gene uncharacterized LOC110262291

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sialyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4
    Names
    alpha2,3-sialyltransferase
    NP_998922.1
    XP_005667554.2
    XP_020957808.1
    XP_020957810.1
    XP_020957811.1
    XP_020957812.1
    XP_020957813.1
    XP_020957814.1
    XP_020957815.1
    XP_020957816.1
    XP_020957817.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213757.1 → NP_998922.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4

      See identical proteins and their annotated locations for NP_998922.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ584674
      UniProtKB/TrEMBL
      A0A287B479, A0A8D0ZP71, Q70E75
      Related
      ENSSSCP00000051230.3, ENSSSCT00000045552.3
      Conserved Domains (1) summary
      pfam00777
      Location:84 → 331
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

      Range
      53442795..53491847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021102153.1 → XP_020957812.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X3

      UniProtKB/TrEMBL
      A0A8D0HVT1, A0A8D1FA49, A0A8D1YWP8
      Conserved Domains (1) summary
      pfam00777
      Location:141 → 385
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    2. XM_021102151.1 → XP_020957810.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X2

      UniProtKB/TrEMBL
      A0A4X1VHC2, A0A8D0P0X2, A0A8D1C712, F1S6H2
      Related
      ENSSSCP00000016153.3, ENSSSCT00000016598.5
      Conserved Domains (1) summary
      pfam00777
      Location:147 → 391
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    3. XM_005667497.3 → XP_005667554.2  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

      UniProtKB/TrEMBL
      A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
      Conserved Domains (1) summary
      pfam00777
      Location:87 → 331
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    4. XM_021102157.1 → XP_020957816.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

      UniProtKB/TrEMBL
      A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
      Conserved Domains (1) summary
      pfam00777
      Location:87 → 331
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    5. XM_021102156.1 → XP_020957815.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

      UniProtKB/TrEMBL
      A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
      Related
      ENSSSCP00000064206.1, ENSSSCT00000076842.1
      Conserved Domains (1) summary
      pfam00777
      Location:87 → 331
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    6. XM_021102152.1 → XP_020957811.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X2

      UniProtKB/TrEMBL
      A0A4X1VHC2, A0A8D0P0X2, A0A8D1C712, F1S6H2
      Conserved Domains (1) summary
      pfam00777
      Location:147 → 391
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    7. XM_021102155.1 → XP_020957814.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X5

      UniProtKB/TrEMBL
      A0A8D0P0X2
      Conserved Domains (1) summary
      pfam00777
      Location:147 → 343
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    8. XM_021102149.1 → XP_020957808.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

      UniProtKB/TrEMBL
      A0A287BC08, A0A8D0R4Y0, A0A8D0ZT53, A0A8D1FA49, A0A8D1YWP8
      Related
      ENSSSCP00000053648.2, ENSSSCT00000041454.3
      Conserved Domains (1) summary
      pfam00777
      Location:122 → 366
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    9. XM_021102154.1 → XP_020957813.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X4

      UniProtKB/TrEMBL
      A0A8D1FA49, A0A8D1YWP8
      Conserved Domains (1) summary
      pfam00777
      Location:122 → 318
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    10. XM_021102158.1 → XP_020957817.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

      UniProtKB/TrEMBL
      A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
      Conserved Domains (1) summary
      pfam00777
      Location:87 → 331
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.