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    SLC1A4 solute carrier family 1 member 4 [ Sus scrofa (pig) ]

    Gene ID: 396600, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC1A4provided by VGNC
    Official Full Name
    solute carrier family 1 member 4provided by VGNC
    Primary source
    VGNC:VGNC:92966
    See related
    Ensembl:ENSSSCG00000028282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    ASCT1
    Expression
    Broad expression in ovary (RPKM 14.2), liver (RPKM 5.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SLC1A4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (76938102..76970519, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (80747982..80754397, complement)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene RAB1A, member RAS oncogene family Neighboring gene centrosomal protein 68 Neighboring gene uncharacterized LOC102160963 Neighboring gene SERTA domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Short communication: amino acid transporters in porcine mammary gland during lactation. Laspiur JP, et al. J Dairy Sci, 2004 Oct. PMID 15377602
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-alanine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-aspartate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-serine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-threonine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-glutamate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in L-serine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neutral amino acid transporter A
    Names
    neutral amino acid transporter ASCT1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      76938102..76970519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021087450.1 → XP_020943109.1  neutral amino acid transporter A isoform X1

      UniProtKB/TrEMBL
      A0A4X1WAU5, A0A8D0WNL7, I3LAL2
      Related
      ENSSSCP00000021080.2, ENSSSCT00000029680.4
      Conserved Domains (1) summary
      pfam00375
      Location:72 → 477
      SDF; Sodium:dicarboxylate symporter family

    2. XM_013996100.2 → XP_013851554.1  neutral amino acid transporter A isoform X2

      Conserved Domains (1) summary
      pfam00375
      Location:2 → 257
      SDF; Sodium:dicarboxylate symporter family
    Nucleotide Protein Strain
    Heading Accession and Version

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