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    gyg1 glycogenin 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 394883, updated on 17-Aug-2024

    Summary

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    Official Symbol
    gyg1provided by Xenbase
    Official Full Name
    glycogenin 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-852729
    See related
    Ensembl:ENSXETG00000016072
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    gyg
    Orthologs
    human mouse all
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    Genomic context

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    See gyg1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (122147700..122167193)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (118671925..118691213)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene mast cell carboxypeptidase A Neighboring gene carboxypeptidase A3 Neighboring gene helicase-like transcription factor Neighboring gene HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 Neighboring gene ceruloplasmin (ferroxidase)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC76101, MGC79098

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables glycogenin glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within glycogen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    glycogenin-1
    NP_989270.1
    XP_031757467.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_203939.1 → NP_989270.1  glycogenin-1

      See identical proteins and their annotated locations for NP_989270.1

      Status: PROVISIONAL

      Source sequence(s)
      BC064206
      UniProtKB/TrEMBL
      A0A6I8SJ17, Q6P328
      Related
      ENSXETP00000115878.1, ENSXETT00000105318.1
      Conserved Domains (1) summary
      cd02537
      Location:5 → 254
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      122147700..122167193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031901607.1 → XP_031757467.1  glycogenin-1 isoform X1

      UniProtKB/TrEMBL
      A0A803K685, F6VIR5
      Related
      ENSXETP00000035050.5, ENSXETT00000035050.5
      Conserved Domains (1) summary
      cd02537
      Location:38 → 287
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.