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    dnajc5gb DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b [ Danio rerio (zebrafish) ]

    Gene ID: 393371, updated on 12-Sep-2024

    Summary

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    Official Symbol
    dnajc5gbprovided by ZNC
    Official Full Name
    DnaJ (Hsp40) homolog, subfamily C, member 5 gamma bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1238
    See related
    Ensembl:ENSDARG00000017687 AllianceGenome:ZFIN:ZDB-GENE-040426-1238
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:63689; wu:fa01g12
    Summary
    Orthologous to human DNAJC5G (DnaJ heat shock protein family (Hsp40) member C5 gamma). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See dnajc5gb in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (6491602..6508359, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (6334370..6351326, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene TatD DNase domain containing 3-like Neighboring gene coenzyme Q8A, genome duplicate b Neighboring gene tumor protein p53 inducible protein 3 Neighboring gene centromere protein O Neighboring gene solute carrier family 5 member 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Tpo knockout in zebrafish partially recapitulates clinical manifestations of congenital hypothyroidism and reveals the involvement of TH in proper development of glucose homeostasis. Fang Y, et al. Gen Comp Endocrinol, 2022 Jul 1. PMID 35367205
    2. Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Kassahn KS, et al. Genome Res, 2009 Aug. PMID 19439512, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC63689

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b; dnaJ (Hsp40) homolog, subfamily C, member 5 gamma b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200400.1 → NP_956694.1  DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b

      See identical proteins and their annotated locations for NP_956694.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054133
      UniProtKB/TrEMBL
      Q7SZ54
      Related
      ENSDARP00000016772.8, ENSDART00000002778.10
      Conserved Domains (2) summary
      COG0484
      Location:14 → 86
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:17 → 79
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      6491602..6508359 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005158564.5 → XP_005158621.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma b isoform X1

      See identical proteins and their annotated locations for XP_005158621.1

      UniProtKB/TrEMBL
      A0A8M2B4Z2
      Conserved Domains (2) summary
      COG0484
      Location:14 → 86
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:17 → 79
      DnaJ; DnaJ domain

    2. XM_005158565.5 → XP_005158622.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma b isoform X1

      See identical proteins and their annotated locations for XP_005158622.1

      UniProtKB/TrEMBL
      A0A8M2B4Z2
      Conserved Domains (2) summary
      COG0484
      Location:14 → 86
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:17 → 79
      DnaJ; DnaJ domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394974.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      114552..131286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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