pabpc1.S poly(A) binding protein, cytoplasmic 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: pabpc1.S
Official Full Name: poly(A) binding protein, cytoplasmic 1 S homeolog
Primary source: Xenbase:XB-GENE-963463
Locus tag: XELAEV_18033915mg
See related: EnsemblRapid:ENSXLAG00005005175
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: pab1; pabp; pabp1; pabpc1; pabpc2; pabpc1-a; pabpc1-b; pabpc1.L
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Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6S	NC_054382.1 (117164961..117185786)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6S	NC_030735.1 (108513975..108557308)

Chromosome 6S - NC_054382.1 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

The molecular basis of coupling between poly(A)-tail length and translational efficiency.
Title: The molecular basis of coupling between poly(A)-tail length and translational efficiency.

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables eukaryotic initiation factor 4G binding	IPI Inferred from Physical Interaction more info	PubMed
enables mRNA 3'-UTR binding	IEA Inferred from Electronic Annotation more info
enables poly(A) binding	IDA Inferred from Direct Assay more info	PubMed
enables poly(A) binding	IEA Inferred from Electronic Annotation more info
enables poly(U) RNA binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA stabilization	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within negative regulation of nuclear-transcribed mRNA poly(A) tail shortening	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of translation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

Names: PABP-1-A; PABP-A; cytoplasmic poly(A)-binding protein 1-A; poly(A) binding protein, cytoplasmic 1 L homeolog; poly(A)-binding protein 1-A; xPABP1-A

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The following sections contain reference sequences that belong to a specific genome build. Explain

The following Reference Sequences have been suppressed. Explain

NM_001086735.1: Suppressed sequence

Description

NM_001086735.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.