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    GL22 germin-like protein subfamily 2 member 2 precursor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3766642, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GL22
    Official Full Name
    germin-like protein subfamily 2 member 2 precursor
    Primary source
    TAIR:AT1G02335
    Locus tag
    AT1G02335
    See related
    Araport:AT1G02335
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    germin-like protein subfamily 2 member 2 precursor; PDGLP2; PLASMODESMAL GERMIN-LIKE PROTEIN 2; T6A9.3
    Summary
    Encodes a plasodesmata-located protein involved in regulating primary root growth by controlling phloem-mediated allocation of resources between the primary and lateral root meristems.
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    Genomic context

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    See GL22 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (463754..464981, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene integrator complex subunit-like protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene protoporphyrinogen oxidase-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of Arabidopsis plasmodesmata germin-like proteins disrupts root growth and development. Ham BK, et al. Plant Cell, 2012 Sep. PMID 22960910, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001083981.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plasmodesmata-mediated intercellular transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    germin-like protein subfamily 2 member 2 precursor
    NP_001077450.1
    • germin-like protein subfamily 2 member 2 precursor (GL22); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 2264 Blast hits to 2183 proteins in 312 species: Archae - 0; Bacteria - 520; Metazoa - 1; Fungi - 98; Plants - 1608; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      463754..464981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001083981.2 → NP_001077450.1  germin-like protein subfamily 2 member 2 precursor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077450.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YR3, Q9FZ27
      UniProtKB/TrEMBL
      A0A178WH53, A0A5S9S700
      Conserved Domains (1) summary
      pfam00190
      Location:62 → 209
      Cupin_1; Cupin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZ27.1

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