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    HOXA1 homeobox A1 [ Gallus gallus (chicken) ]

    Gene ID: 374051, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HOXA1provided by CGNC
    Official Full Name
    homeobox A1provided by CGNC
    Primary source
    CGNC:49021
    See related
    Ensembl:ENSGALG00010001788
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    HOXA2
    Orthologs
    human mouse all
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    Genomic context

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    See HOXA1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (32479290..32481661, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (32531903..32534275, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110067 Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene homeobox A2 Neighboring gene homeobox A3 Neighboring gene homeobox A4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of miR-10a mediated gene regulation in avian splenocytes. Trakooljul N, et al. Gene, 2012 May 25. PMID 22446044

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-A1
    Names
    homeo box A1
    homeobox A2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      32479290..32481661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003640697.6 → XP_003640745.1  homeobox protein Hox-A1

      UniProtKB/TrEMBL
      R4GHI8
      Related
      ENSGALP00010002367.1, ENSGALT00010004070.1
      Conserved Domains (1) summary
      pfam00046
      Location:218 → 271
      Homeobox; Homeobox domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      32531903..32534275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040662828.2 → XP_040518762.1  homeobox protein Hox-A1

      UniProtKB/TrEMBL
      R4GHI8
      Conserved Domains (1) summary
      pfam00046
      Location:218 → 271
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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