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    Vom1r54 vomeronasal 1 receptor 54 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365190, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Vom1r54provided by RGD
    Official Full Name
    vomeronasal 1 receptor 54provided by RGD
    Primary source
    RGD:1308663
    See related
    AllianceGenome:RGD:1308663
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    V1rl1; V1rm4
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    Genomic context

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    See Vom1r54 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (81915905..81916828, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (72843741..72844664, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (66388887..66389811) , (66414352..66429917, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 53 Neighboring gene vomeronasal 1 receptor pseudogene 61 Neighboring gene vomeronasal 1 receptor pseudogene 62 Neighboring gene vomeronasal 1 receptor pseudogene 63

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to pheromone IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sensory perception of chemical stimulus IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal 1 receptor 54; vomeronasal type-1 receptor 1
    Names
    vomernasal 1 receptor Vom1r54
    vomeronasal 1 receptor, L1
    vomeronasal 1 receptor, M4
    vomeronasal V1r-type receptor V1rm4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      81915905..81916828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039097319.1 → XP_038953247.1  vomeronasal type-1 receptor 1

      UniProtKB/TrEMBL
      Q5J3E1
      Conserved Domains (2) summary
      cd14964
      Location:10 → 35
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:10 → 302
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001008963.1: Suppressed sequence

      Description
      NM_001008963.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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