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    Gimd1 GIMAP family P-loop NTPase domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362042, updated on 10-Oct-2024

    Summary

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    Official Symbol
    Gimd1provided by RGD
    Official Full Name
    GIMAP family P-loop NTPase domain containing 1provided by RGD
    Primary source
    RGD:1563706
    See related
    EnsemblRapid:ENSRNOG00000042721 AllianceGenome:RGD:1563706
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable GTP binding activity. Orthologous to human GIMD1 (GIMAP family P-loop NTPase domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 22.7), Liver (RPKM 16.9) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Gimd1 in Genome Data Viewer
    Location:
    2q43
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (223777876..223812582)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (221103878..221138559)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (237679672..237714434)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 482 Neighboring gene uncharacterized LOC134485767 Neighboring gene uncharacterized LOC102547683 Neighboring gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 Neighboring gene TBC1 domain containing kinase Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    GTPase IMAP family member GIMD1
    Names
    GIMAP family P-loop NTPase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113782.2 → NP_001107254.2  GTPase IMAP family member GIMD1

      See identical proteins and their annotated locations for NP_001107254.2

      Status: VALIDATED

      Source sequence(s)
      BC158622, JAXUCZ010000002
      UniProtKB/Swiss-Prot
      B0BMZ3
      UniProtKB/TrEMBL
      A0A8L2QUX3
      Related
      ENSRNOP00000060170.2, ENSRNOT00000064628.3
      Conserved Domains (1) summary
      cl38936
      Location:9 → 175
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      223777876..223812582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063282220.1 → XP_063138290.1  GTPase IMAP family member GIMD1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2QUX3

    2. XM_039102722.2 → XP_038958650.1  GTPase IMAP family member GIMD1 isoform X1

      UniProtKB/Swiss-Prot
      B0BMZ3
      UniProtKB/TrEMBL
      A0A8L2QUX3
      Conserved Domains (1) summary
      cl38936
      Location:9 → 175
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B0BMZ3.1 GenPept UniProtKB/Swiss-Prot:B0BMZ3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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