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    sdf2 stromal cell-derived factor 2 [ Danio rerio (zebrafish) ]

    Gene ID: 336879, updated on 2-Nov-2024

    Summary

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    Official Symbol
    sdf2provided by ZNC
    Official Full Name
    stromal cell-derived factor 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8823
    See related
    Ensembl:ENSDARG00000024026 AllianceGenome:ZFIN:ZDB-GENE-030131-8823
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fk23f01; zgc:66291; wu:fk23f01
    Summary
    Orthologous to human SDF2 (stromal cell derived factor 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See sdf2 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (26021426..26028211, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (25984731..25991516, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene calneuron 2 Neighboring gene SPT6 homolog, histone chaperone and transcription elongation factor Neighboring gene RAB34, member RAS oncogene family b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The lasting after-effects of an ancient polyploidy on the genomes of teleosts. Conant GC. PLoS One, 2020. PMID 32298330, Free PMC Article
    2. Genomic organization and evolution of olfactory receptors and trace amine-associated receptors in channel catfish, Ictalurus punctatus. Gao S, et al. Biochim Biophys Acta Gen Subj, 2017 Mar. PMID 27773705
    3. Evolution of the tbx6/16 subfamily genes in vertebrates: insights from zebrafish. Ahn D, et al. Mol Biol Evol, 2012 Dec. PMID 22915831
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    stromal cell-derived factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200039.1 → NP_956333.1  stromal cell-derived factor 2 precursor

      See identical proteins and their annotated locations for NP_956333.1

      Status: PROVISIONAL

      Source sequence(s)
      BC055586
      UniProtKB/TrEMBL
      Q7SXI7
      Related
      ENSDARP00000029000.6, ENSDART00000034875.7
      Conserved Domains (1) summary
      smart00472
      Location:91 → 146
      MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      26021426..26028211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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