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    UBE2D3 ubiquitin conjugating enzyme E2 D3 [ Bos taurus (domestic cattle) ]

    Gene ID: 326583, updated on 10-Oct-2024

    Summary

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    Official Symbol
    UBE2D3provided by VGNC
    Official Full Name
    ubiquitin conjugating enzyme E2 D3provided by VGNC
    Primary source
    VGNC:VGNC:107251
    See related
    Ensembl:ENSBTAG00000048761
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    UBE2D3P
    Orthologs
    human mouse all
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    Genomic context

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    See UBE2D3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (22014718..22044311)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345481 Neighboring gene CDGSH iron sulfur domain 2 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene mannosidase beta Neighboring gene microRNA mir-2285bq

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Ishiwata H, et al. Mol Reprod Dev, 2003 May. PMID 12658628
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K11-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme E2 D3
    Names
    (E3-independent) E2 ubiquitin-conjugating enzyme D3
    E2 ubiquitin-conjugating enzyme D3
    ubiquitin carrier protein D3
    ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
    ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC4/5)
    ubiquitin-protein ligase D3
    NP_001068603.1
    XP_024848816.1
    XP_024848821.1
    XP_024848822.1
    XP_024848824.1
    XP_059743337.1
    XP_059743338.1
    XP_059743339.1
    XP_059743340.1
    XP_059743341.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075135.1 → NP_001068603.1  ubiquitin-conjugating enzyme E2 D3

      See identical proteins and their annotated locations for NP_001068603.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102425
      UniProtKB/Swiss-Prot
      Q3ZCF7
      UniProtKB/TrEMBL
      F1MFL6
      Related
      ENSBTAP00000063578.1, ENSBTAT00000066609.1
      Conserved Domains (2) summary
      COG5078
      Location:1 → 147
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      cl00154
      Location:1 → 146
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22014718..22044311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024993053.2 → XP_024848821.1  ubiquitin-conjugating enzyme E2 D3 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M5N0, A0AAA9S092
      Conserved Domains (1) summary
      cl00154
      Location:1 → 146
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    2. XM_059887355.1 → XP_059743338.1  ubiquitin-conjugating enzyme E2 D3 isoform X1

    3. XM_024993054.2 → XP_024848822.1  ubiquitin-conjugating enzyme E2 D3 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M5N0, A0AAA9S092
      Conserved Domains (1) summary
      cl00154
      Location:1 → 146
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    4. XM_059887357.1 → XP_059743340.1  ubiquitin-conjugating enzyme E2 D3 isoform X2

    5. XM_024993056.2 → XP_024848824.1  ubiquitin-conjugating enzyme E2 D3 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M5N0, A0AAA9S092
      Conserved Domains (1) summary
      cl00154
      Location:1 → 146
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    6. XM_059887356.1 → XP_059743339.1  ubiquitin-conjugating enzyme E2 D3 isoform X1

    7. XM_059887354.1 → XP_059743337.1  ubiquitin-conjugating enzyme E2 D3 isoform X1

    8. XM_024993048.2 → XP_024848816.1  ubiquitin-conjugating enzyme E2 D3 isoform X3

      UniProtKB/TrEMBL
      A0AAA9S092, A0AAA9SNW7
      Related
      ENSBTAP00000087058.1, ENSBTAT00000132420.1
      Conserved Domains (1) summary
      cl00154
      Location:1 → 146
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    9. XM_059887358.1 → XP_059743341.1  ubiquitin-conjugating enzyme E2 D3 isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZCF7.1 GenPept UniProtKB/Swiss-Prot:Q3ZCF7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials