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    Tenm3 teneurin transmembrane protein 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306451, updated on 18-Sep-2024

    Summary

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    Symbol
    Tenm3provided by RGD
    Full Name
    teneurin transmembrane protein 3provided by RGD
    Primary source
    RGD:1306641
    See related
    EnsemblRapid:ENSRNOG00000012802 AllianceGenome:RGD:1306641
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Odz3
    Summary
    Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and regulation of homophilic cell adhesion. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in neuron projection. Orthologous to human TENM3 (teneurin transmembrane protein 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 118.7), Uterus (RPKM 100.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tenm3 in Genome Data Viewer
    Location:
    16q11
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (47984732..50711352)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (41251909..43978594)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (46422676..46929023)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import receptor subunit TOM20 homolog pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase A pseudogene Neighboring gene large ribosomal subunit protein uL16-like Neighboring gene uncharacterized LOC120097405 Neighboring gene U11 spliceosomal RNA Neighboring gene large ribosomal subunit protein mL48-like Neighboring gene uncharacterized LOC134482499 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134482498 Neighboring gene uncharacterized protein DDB_G0271670-like Neighboring gene uncharacterized LOC102552563 Neighboring gene uncharacterized LOC134482500 Neighboring gene macrophage migration inhibitory factor, pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Ten-m3 is required for the development of topography in the ipsilateral retinocollicular pathway. Dharmaratne N, et al. PLoS One, 2012. PMID 23028443, Free PMC Article
    2. Homozygous null mutation in ODZ3 causes microphthalmia in humans. Aldahmesh MA, et al. Genet Med, 2012 Nov. PMID 22766609
    3. Ten_m3 regulates eye-specific patterning in the mammalian visual pathway and is required for binocular vision. Leamey CA, et al. PLoS Biol, 2007 Sep. PMID 17803360, Free PMC Article
    4. Teneurin-3 controls topographic circuit assembly in the hippocampus. Berns DS, et al. Nature, 2018 Feb 15. PMID 29414938, Free PMC Article
    5. Differential gene expression between sensory neocortical areas: potential roles for Ten_m3 and Bcl6 in patterning visual and somatosensory pathways. Leamey CA, et al. Cereb Cortex, 2008 Jan. PMID 17478416

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables protein heterodimerization activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein heterodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables protein homodimerization activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    NOT enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in camera-type eye morphogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in neuron development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of neuron projection development ISO
    Inferred from Sequence Orthology
    more info
    		  
    NOT involved_in regulation of homophilic cell adhesion ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of homophilic cell adhesion ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in synaptic membrane adhesion ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in glutamatergic synapse ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in presynaptic active zone membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    teneurin-3
    Names
    odd Oz/ten-m homolog 3
    odz, odd Oz/ten-m homolog 3
    odz, odd Oz/ten-m homolog 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001169133.2 → NP_001162604.1  teneurin-3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A0A8I6ABL2, A6JPJ6
      Related
      ENSRNOP00000091422.1, ENSRNOT00000105413.2
      Conserved Domains (9) summary
      COG3209
      Location:1918 → 2429
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1183 → 1222
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1838 → 1878
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2333 → 2407
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1154 → 1513
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1630 → 1661
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2630 → 2707
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 814
      exchanger_TraA; outer membrane exchange protein TraA

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      47984732..50711352
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063275416.1 → XP_063131486.1  teneurin-3 isoform X1

      UniProtKB/TrEMBL
      A6JPJ6

    2. XM_039094506.2 → XP_038950434.1  teneurin-3 isoform X1

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1925 → 2436
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1190 → 1229
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1845 → 1885
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2340 → 2414
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1161 → 1520
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1637 → 1668
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2637 → 2714
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 821
      exchanger_TraA; outer membrane exchange protein TraA

    3. XM_039094513.2 → XP_038950441.1  teneurin-3 isoform X5

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1918 → 2429
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1190 → 1225
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1838 → 1878
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2333 → 2407
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1161 → 1513
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1630 → 1661
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2630 → 2707
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 821
      exchanger_TraA; outer membrane exchange protein TraA

    4. XM_039094510.2 → XP_038950438.1  teneurin-3 isoform X2

      UniProtKB/TrEMBL
      A6JPJ6
      Related
      ENSRNOP00000111639.1, ENSRNOT00000140066.1
      Conserved Domains (9) summary
      COG3209
      Location:1924 → 2435
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1189 → 1228
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1844 → 1884
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2339 → 2413
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1160 → 1519
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1636 → 1667
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2636 → 2713
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 820
      exchanger_TraA; outer membrane exchange protein TraA

    5. XM_039094512.2 → XP_038950440.1  teneurin-3 isoform X4

      UniProtKB/TrEMBL
      A0A8I6ABL2, A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1918 → 2429
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1183 → 1222
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1838 → 1878
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2333 → 2407
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1154 → 1513
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1630 → 1661
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2630 → 2707
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 814
      exchanger_TraA; outer membrane exchange protein TraA

    6. XM_039094511.2 → XP_038950439.1  teneurin-3 isoform X3

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1924 → 2435
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1189 → 1228
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1844 → 1884
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2339 → 2413
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1160 → 1519
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1636 → 1667
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2636 → 2713
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 806
      exchanger_TraA; outer membrane exchange protein TraA

    7. XM_039094507.2 → XP_038950435.1  teneurin-3 isoform X1

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1925 → 2436
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1190 → 1229
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1845 → 1885
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2340 → 2414
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1161 → 1520
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1637 → 1668
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2637 → 2714
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 821
      exchanger_TraA; outer membrane exchange protein TraA

    8. XM_039094514.2 → XP_038950442.1  teneurin-3 isoform X6

      UniProtKB/TrEMBL
      A6JPJ6
      Related
      ENSRNOP00000109669.1, ENSRNOT00000137496.1
      Conserved Domains (9) summary
      COG3209
      Location:1909 → 2420
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1174 → 1213
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1829 → 1869
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2324 → 2398
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1145 → 1504
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1621 → 1652
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2621 → 2698
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 791
      exchanger_TraA; outer membrane exchange protein TraA

    9. XM_039094515.2 → XP_038950443.1  teneurin-3 isoform X7

      UniProtKB/TrEMBL
      A0A8I5Y4Y3, A6JPJ6
      Related
      ENSRNOP00000076753.1, ENSRNOT00000094358.2
      Conserved Domains (9) summary
      COG3209
      Location:1902 → 2413
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1174 → 1209
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1822 → 1862
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2317 → 2391
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1145 → 1497
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1614 → 1645
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2614 → 2691
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 791
      exchanger_TraA; outer membrane exchange protein TraA

    10. XM_039094516.2 → XP_038950444.1  teneurin-3 isoform X8

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1832 → 2343
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1097 → 1136
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1752 → 1792
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2247 → 2321
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1068 → 1427
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1544 → 1575
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 214
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2544 → 2621
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:370 → 728
      exchanger_TraA; outer membrane exchange protein TraA

    11. XM_063275418.1 → XP_063131488.1  teneurin-3 isoform X9

      UniProtKB/TrEMBL
      A6JPJ6

    12. XM_063275419.1 → XP_063131489.1  teneurin-3 isoform X10

      UniProtKB/TrEMBL
      A6JPJ6, F1LV44
      Related
      ENSRNOP00000017625.7, ENSRNOT00000017624.8

    13. XM_039094508.2 → XP_038950436.1  teneurin-3 isoform X1

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1925 → 2436
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1190 → 1229
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1845 → 1885
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2340 → 2414
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1161 → 1520
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1637 → 1668
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2637 → 2714
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 821
      exchanger_TraA; outer membrane exchange protein TraA

    14. XM_063275417.1 → XP_063131487.1  teneurin-3 isoform X1

      UniProtKB/TrEMBL
      A6JPJ6

    15. XM_039094509.2 → XP_038950437.1  teneurin-3 isoform X1

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1925 → 2436
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1190 → 1229
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1845 → 1885
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2340 → 2414
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1161 → 1520
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1637 → 1668
      RHS_repeat; RHS Repeat
      pfam06484
      Location:11 → 307
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2637 → 2714
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:463 → 821
      exchanger_TraA; outer membrane exchange protein TraA

    16. XM_039094517.2 → XP_038950445.1  teneurin-3 isoform X11

      UniProtKB/TrEMBL
      A6JPJ6
      Conserved Domains (9) summary
      COG3209
      Location:1654 → 2165
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:919 → 958
      NHL; NHL repeat [structural motif]
      TIGR01643
      Location:1574 → 1614
      YD_repeat_2x; YD repeat (two copies)
      TIGR03696
      Location:2069 → 2143
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:890 → 1249
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1366 → 1397
      RHS_repeat; RHS Repeat
      pfam06484
      Location:1 → 36
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2366 → 2443
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:192 → 550
      exchanger_TraA; outer membrane exchange protein TraA

    17. XM_063275424.1 → XP_063131494.1  teneurin-3 isoform X11

      UniProtKB/TrEMBL
      A6JPJ6

    18. XM_063275420.1 → XP_063131490.1  teneurin-3 isoform X11

      UniProtKB/TrEMBL
      A6JPJ6

    19. XM_063275421.1 → XP_063131491.1  teneurin-3 isoform X12

      UniProtKB/TrEMBL
      A6JPJ6

    20. XM_063275422.1 → XP_063131492.1  teneurin-3 isoform X13

      UniProtKB/TrEMBL
      A6JPJ6
      Related
      ENSRNOP00000112352.1, ENSRNOT00000168106.1

    21. XM_063275423.1 → XP_063131493.1  teneurin-3 isoform X11

      UniProtKB/TrEMBL
      A6JPJ6
    Nucleotide Protein Strain
    Heading Accession and Version

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