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    GYG1 glycogenin 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 280812, updated on 10-Oct-2024

    Summary

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    Official Symbol
    GYG1provided by VGNC
    Official Full Name
    glycogenin 1provided by VGNC
    Primary source
    VGNC:VGNC:29728
    See related
    BGD:BT13733; Ensembl:ENSBTAG00000001721
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    GYG
    Orthologs
    human mouse all
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    Genomic context

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    See GYG1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (119150399..119191294, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS6-like Neighboring gene HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 Neighboring gene helicase like transcription factor Neighboring gene carboxypeptidase A3 Neighboring gene carboxypeptidase B1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rabbit skeletal muscle glycogenin. Molecular cloning and production of fully functional protein in Escherichia coli. Viskupic E, et al. J Biol Chem, 1992 Dec 25. PMID 1281472
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137720

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycogenin-1
    NP_001039332.1
    XP_059740982.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045867.1 → NP_001039332.1  glycogenin-1

      See identical proteins and their annotated locations for NP_001039332.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114101
      UniProtKB/TrEMBL
      A0AAA9SRQ3, Q29RN2
      Related
      ENSBTAP00000064123.2, ENSBTAT00000075393.2
      Conserved Domains (2) summary
      cd02537
      Location:4 → 256
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
      COG1442
      Location:92 → 221
      RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      119150399..119191294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884999.1 → XP_059740982.1  glycogenin-1 isoform X1

      Related
      ENSBTAP00000002261.6, ENSBTAT00000002261.6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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