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    SIK3 SIK family kinase 3 [ Homo sapiens (human) ]

    Gene ID: 23387, updated on 28-Oct-2024

    Summary

    Official Symbol
    SIK3provided by HGNC
    Official Full Name
    SIK family kinase 3provided by HGNC
    Primary source
    HGNC:HGNC:29165
    See related
    Ensembl:ENSG00000160584 MIM:614776; AllianceGenome:HGNC:29165
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    L19; QSK; SEMDK; SIK-3
    Summary
    Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in positive regulation of TORC1 signaling; positive regulation of TORC2 signaling; and protein phosphorylation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in testis (RPKM 19.2), brain (RPKM 13.9) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SIK3 in Genome Data Viewer
    Location:
    11q23.3
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (116843402..117098428, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (116858511..117113691, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (116714118..116969144, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116700143-116701075 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3925 Neighboring gene APOA1 antisense RNA Neighboring gene apolipoprotein C3 Neighboring gene apolipoprotein A1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5557 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5558 Neighboring gene OCT4 hESC enhancer GRCh37_chr11:116766707-116767208 Neighboring gene MPRA-validated peak1483 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3927 Neighboring gene MPRA-validated peak1484 silencer Neighboring gene MPRA-validated peak1485 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5560 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:116881555-116882207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5561 Neighboring gene RNY4 pseudogene 6 Neighboring gene ribosomal protein S27 pseudogene 19 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3928 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5562 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5563 Neighboring gene MPRA-validated peak1487 silencer Neighboring gene uncharacterized LOC124902763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5564 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3929 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3930 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:116979894-116980128 Neighboring gene cleavage and polyadenylation specificity factor subunit 5-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:117008445-117009330 Neighboring gene proprotein convertase subtilisin/kexin type 7 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Spondyloepimetaphyseal dysplasia, Krakow type
    MedGen: C4748455 OMIM: 618162 GeneReviews: Not available
    Compare labs

    EBI GWAS Catalog

    Description
    Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.
    EBI GWAS Catalog
    Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.
    EBI GWAS Catalog
    Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
    EBI GWAS Catalog
    Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.
    EBI GWAS Catalog
    Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.
    EBI GWAS Catalog
    Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.
    EBI GWAS Catalog
    Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.
    EBI GWAS Catalog
    Salt-inducible kinase 3, SIK3, is a new gene associated with hearing.
    EBI GWAS Catalog

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ12240, KIAA0999

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables histone H2AS1 kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables tau-protein kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intracellular signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in microtubule cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of TORC1 signaling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of TORC2 signaling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    serine/threonine-protein kinase SIK3
    Names
    salt-inducible kinase 3
    serine/threonine-protein kinase QSK
    NP_001268677.1
    NP_001268678.1
    NP_001353615.1
    NP_001353616.1
    NP_079440.3
    XP_005271539.2
    XP_005271541.2
    XP_005271542.1
    XP_011541024.1
    XP_011541025.1
    XP_011541026.1
    XP_011541027.1
    XP_011541028.1
    XP_016872913.1
    XP_016872914.1
    XP_016872915.1
    XP_047282627.1
    XP_047282628.1
    XP_047282629.1
    XP_047282630.1
    XP_047282631.1
    XP_047282632.1
    XP_054224194.1
    XP_054224195.1
    XP_054224196.1
    XP_054224197.1
    XP_054224198.1
    XP_054224199.1
    XP_054224200.1
    XP_054224201.1
    XP_054224202.1
    XP_054224203.1
    XP_054224204.1
    XP_054224205.1
    XP_054224206.1
    XP_054224207.1
    XP_054224208.1
    XP_054224209.1
    XP_054224210.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281748.3NP_001268677.1  serine/threonine-protein kinase SIK3 isoform 2

      See identical proteins and their annotated locations for NP_001268677.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate exon in the 5' UTR and uses a downstream start codon compared to variant 1. It encodes isoform 2 which has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      AI369377, AP000936, AP006216, BC128511
      UniProtKB/TrEMBL
      A1A5A9, M5FMX3
      Conserved Domains (3) summary
      smart00220
      Location:1158
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14410
      Location:187231
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cl21453
      Location:1158
      PKc_like; Protein Kinases, catalytic domain
    2. NM_001281749.3NP_001268678.1  serine/threonine-protein kinase SIK3 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This results in a shorter isoform (3) compared to isoform 1.
      Source sequence(s)
      AI369377, AP000936, AP006216, BC128510
      Consensus CDS
      CCDS60974.1
      UniProtKB/TrEMBL
      M5FMX3
      Related
      ENSP00000390442.2, ENST00000446921.6
      Conserved Domains (1) summary
      cd14071
      Location:65317
      STKc_SIK; Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases
    3. NM_001366686.3NP_001353615.1  serine/threonine-protein kinase SIK3 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AP000936, AP003070, AP006216
      Consensus CDS
      CCDS91600.1
      UniProtKB/TrEMBL
      H0Y4E8, M5FMX3
      Related
      ENSP00000391295.2, ENST00000445177.6
      Conserved Domains (2) summary
      cd14410
      Location:346390
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cd14071
      Location:65317
      STKc_SIK; Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases
    4. NM_001366687.1NP_001353616.1  serine/threonine-protein kinase SIK3 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AP000936, AP003070, BC121188
      UniProtKB/TrEMBL
      Q0IJ40
      Conserved Domains (1) summary
      cl21453
      Location:65205
      PKc_like; Protein Kinases, catalytic domain
    5. NM_025164.6NP_079440.3  serine/threonine-protein kinase SIK3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB023216, AI369377, AP000936, AP006216
      Consensus CDS
      CCDS8379.2
      UniProtKB/Swiss-Prot
      A1A5A8, H0Y494, J3KPC8, Q59FY2, Q5M9N1, Q6P3R6, Q8IYM8, Q9HA50, Q9Y2K2
      UniProtKB/TrEMBL
      M5FMX3
      Related
      ENSP00000364449.1, ENST00000375300.6
      Conserved Domains (2) summary
      cd14410
      Location:346390
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cd14071
      Location:65317
      STKc_SIK; Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      116843402..117098428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017017424.2XP_016872913.1  serine/threonine-protein kinase SIK3 isoform X6

      UniProtKB/TrEMBL
      M5FMX3
    2. XM_047426672.1XP_047282628.1  serine/threonine-protein kinase SIK3 isoform X4

    3. XM_005271482.5XP_005271539.2  serine/threonine-protein kinase SIK3 isoform X2

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (2) summary
      smart00220
      Location:66317
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14071
      Location:65317
      STKc_SIK; Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases
    4. XM_005271484.4XP_005271541.2  serine/threonine-protein kinase SIK3 isoform X5

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (2) summary
      cd14410
      Location:346390
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cd14071
      Location:65317
      STKc_SIK; Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases
    5. XM_011542722.2XP_011541024.1  serine/threonine-protein kinase SIK3 isoform X3

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (2) summary
      cd14410
      Location:346390
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cd14071
      Location:65317
      STKc_SIK; Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases
    6. XM_011542725.3XP_011541027.1  serine/threonine-protein kinase SIK3 isoform X7

      See identical proteins and their annotated locations for XP_011541027.1

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (3) summary
      smart00220
      Location:1158
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14410
      Location:187231
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cl21453
      Location:1158
      PKc_like; Protein Kinases, catalytic domain
    7. XM_011542724.3XP_011541026.1  serine/threonine-protein kinase SIK3 isoform X7

      See identical proteins and their annotated locations for XP_011541026.1

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (3) summary
      smart00220
      Location:1158
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14410
      Location:187231
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cl21453
      Location:1158
      PKc_like; Protein Kinases, catalytic domain
    8. XM_011542723.3XP_011541025.1  serine/threonine-protein kinase SIK3 isoform X7

      See identical proteins and their annotated locations for XP_011541025.1

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (3) summary
      smart00220
      Location:1158
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14410
      Location:187231
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cl21453
      Location:1158
      PKc_like; Protein Kinases, catalytic domain
    9. XM_017017425.2XP_016872914.1  serine/threonine-protein kinase SIK3 isoform X7

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (3) summary
      smart00220
      Location:1158
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14410
      Location:187231
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cl21453
      Location:1158
      PKc_like; Protein Kinases, catalytic domain
    10. XM_017017426.2XP_016872915.1  serine/threonine-protein kinase SIK3 isoform X7

      UniProtKB/TrEMBL
      M5FMX3
      Conserved Domains (3) summary
      smart00220
      Location:1158
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14410
      Location:187231
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cl21453
      Location:1158
      PKc_like; Protein Kinases, catalytic domain
    11. XM_047426673.1XP_047282629.1  serine/threonine-protein kinase SIK3 isoform X9

      Related
      ENST00000488337.5
    12. XM_005271485.4XP_005271542.1  serine/threonine-protein kinase SIK3 isoform X8

      UniProtKB/TrEMBL
      B3KVE2
    13. XM_047426671.1XP_047282627.1  serine/threonine-protein kinase SIK3 isoform X1

      UniProtKB/TrEMBL
      H0Y4E8
    14. XM_011542726.2XP_011541028.1  serine/threonine-protein kinase SIK3 isoform X10

      Conserved Domains (2) summary
      cd14410
      Location:346390
      UBA_SIK3; UBA domain found in salt-inducible kinase 3 (SIK3)
      cd14071
      Location:65317
      STKc_SIK; Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases
    15. XM_047426674.1XP_047282630.1  serine/threonine-protein kinase SIK3 isoform X11

    16. XM_047426676.1XP_047282632.1  serine/threonine-protein kinase SIK3 isoform X13

    17. XM_047426675.1XP_047282631.1  serine/threonine-protein kinase SIK3 isoform X12

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      116858511..117113691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054368224.1XP_054224199.1  serine/threonine-protein kinase SIK3 isoform X6

    2. XM_054368222.1XP_054224197.1  serine/threonine-protein kinase SIK3 isoform X4

    3. XM_054368220.1XP_054224195.1  serine/threonine-protein kinase SIK3 isoform X2

    4. XM_054368223.1XP_054224198.1  serine/threonine-protein kinase SIK3 isoform X5

    5. XM_054368221.1XP_054224196.1  serine/threonine-protein kinase SIK3 isoform X3

    6. XM_054368229.1XP_054224204.1  serine/threonine-protein kinase SIK3 isoform X7

    7. XM_054368227.1XP_054224202.1  serine/threonine-protein kinase SIK3 isoform X7

    8. XM_054368225.1XP_054224200.1  serine/threonine-protein kinase SIK3 isoform X7

    9. XM_054368226.1XP_054224201.1  serine/threonine-protein kinase SIK3 isoform X7

    10. XM_054368228.1XP_054224203.1  serine/threonine-protein kinase SIK3 isoform X7

    11. XM_054368231.1XP_054224206.1  serine/threonine-protein kinase SIK3 isoform X9

    12. XM_054368230.1XP_054224205.1  serine/threonine-protein kinase SIK3 isoform X8

    13. XM_054368219.1XP_054224194.1  serine/threonine-protein kinase SIK3 isoform X1

      UniProtKB/TrEMBL
      H0Y4E8
    14. XM_054368232.1XP_054224207.1  serine/threonine-protein kinase SIK3 isoform X10

    15. XM_054368233.1XP_054224208.1  serine/threonine-protein kinase SIK3 isoform X11

    16. XM_054368235.1XP_054224210.1  serine/threonine-protein kinase SIK3 isoform X13

    17. XM_054368234.1XP_054224209.1  serine/threonine-protein kinase SIK3 isoform X12