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    ptr-24 SSD domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181456, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ptr-24
    Official Full Name
    SSD domain-containing protein
    Primary source
    WormBase:WBGene00004238
    Locus tag
    CELE_F46G10.5
    See related
    AllianceGenome:WB:WBGene00004238
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in molting cycle. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle membrane and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See ptr-24 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    17
    Sequence:
    Chromosome: X; NC_003284.9 (13338028..13348125)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene NAD-dependent protein deacylase sir-2.3 Neighboring gene Fungal lipase-like domain-containing protein Neighboring gene Protein mxl-3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Microbial metabolites regulate host lipid metabolism through NR5A-Hedgehog signalling. Lin CJ, et al. Nat Cell Biol, 2017 May. PMID 28436966, Free PMC Article
    2. Homologs of the Hh signalling network in C. elegans. Bürglin TR, et al. WormBook, 2006 Jan 28. PMID 18050469, Free PMC Article
    3. A C. elegans patched gene, ptc-1, functions in germ-line cytokinesis. Kuwabara PE, et al. Genes Dev, 2000 Aug 1. PMID 10921907, Free PMC Article
    4. The function and expansion of the Patched- and Hedgehog-related homologs in C. elegans. Zugasti O, et al. Genome Res, 2005 Oct. PMID 16204193, Free PMC Article
    5. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Lehner B, et al. Nat Genet, 2006 Aug. PMID 16845399

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in molting cycle, collagen and cuticulin-based cuticle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in molting cycle, collagen and cuticulin-based cuticle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasmic vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SSD domain-containing protein
    NP_001257219.1
    • Confirmed by transcript evidence
    NP_001257220.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      13338028..13348125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270290.5 → NP_001257219.1  SSD domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257219.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B6VQ56
      Conserved Domains (1) summary
      cl25655
      Location:117 → 841
      Patched; Patched family

    2. NM_001270291.2 → NP_001257220.1  SSD domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257220.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B6VQ55
      Conserved Domains (1) summary
      cl25655
      Location:51 → 710
      Patched; Patched family
    Nucleotide Protein
    Heading Accession and Version

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