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    rpc-1 DNA-directed RNA polymerase subunit [ Caenorhabditis elegans ]

    Gene ID: 177491, updated on 18-Sep-2024

    Summary

    Official Symbol
    rpc-1
    Official Full Name
    DNA-directed RNA polymerase subunit
    Primary source
    WormBase:WBGene00004411
    Locus tag
    CELE_C42D4.8
    See related
    AllianceGenome:WB:WBGene00004411
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity and nucleotidyltransferase activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 7 with or without oligodontia and-or hypogonadotropic hypogonadism and progeria. Orthologous to human POLR3A (RNA polymerase III subunit A). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See rpc-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    13
    Sequence:
    Chromosome: IV; NC_003282.8 (7160135..7165748, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene MSP domain-containing protein Neighboring gene Serine/threonine-protein phosphatase Neighboring gene Protein maph-9 Neighboring gene Uncharacterized protein Neighboring gene Skp1-related protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to RNA polymerase III activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of DNA-directed RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of RNA polymerase III complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear lumen IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    DNA-directed RNA polymerase subunit
    NP_501127.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7160135..7165748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068726.5NP_501127.2  DNA-directed RNA polymerase subunit [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501127.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18566
      Conserved Domains (4) summary
      cd02736
      Location:10341374
      RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
      PRK04309
      Location:10191383
      PRK04309; DNA-directed RNA polymerase subunit A''; Validated
      PRK08566
      Location:14923
      PRK08566; DNA-directed RNA polymerase subunit A'; Validated
      cd02583
      Location:26887
      RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain